100% more pipefail = 100% more pipewin

• tests use 1.96
• set -o pipefail in bwa pipe
• Nikhil's revised R handling now included

Day 455 of captivity; we have lost all hope of ever leaving here alive

abra cadaver

• abra will randomly decide a uuid for your dir
• split reads will use two threads for more throughput
• some alex penson jazz
• some cyriac refinements

Not even the rain has such small fastq chunks

Fillin' it and Fillin' it and Fillin' it out

fillout will deploy!
split reads is different, if not better!
fireworks workflow daemon is slower to poll so mark stops breaking everything we love!*

*probably not, we need to take marks' data away

Underwhelming improvements

Faceto Perfecto

slightly better than before

• separate vep cache and program path
• add cmo_fillout

They see me installin', they hating

What has two thumbs and made cmo installable again?

blech

i got 99 problems and list2bed is definitely one