diff --git a/settings.py b/settings.py index 15ace06..98c0971 100644 --- a/settings.py +++ b/settings.py @@ -159,7 +159,11 @@ "Proj_1": { # same as Proj_08390_G but both filenames and file contents have been scrubbed; results in different file md5's "MAF_DIR": os.path.join(FIXTURES_DIR, "Proj_1", "maf"), "BAM_DIR": os.path.join(FIXTURES_DIR, "Proj_1", "bam"), - 'REF_FASTA': REF_FASTA + "FACETS_DIR": os.path.join(FIXTURES_DIR, "Proj_1", "facets"), + "QC_DIR": os.path.join(FIXTURES_DIR, "Proj_1", "qc"), + "INPUTS_DIR": os.path.join(FIXTURES_DIR, "Proj_1", "inputs"), + 'REF_FASTA': REF_FASTA, + "targets_list": "/juno/work/ci/resources/roslin_resources/targets/HemePACT_v4/b37/HemePACT_v4_b37_targets.ilist", }, "demo":{ # small subset of samples on a full project "DIR": os.path.join(FIXTURES_DIR, "demo"),