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FILTER tags of same variant from different samples are being merged #142

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ckandoth opened this issue Sep 28, 2017 · 0 comments
Open

FILTER tags of same variant from different samples are being merged #142

ckandoth opened this issue Sep 28, 2017 · 0 comments
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ckandoth commented Sep 28, 2017 •
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This bug has always existed. It happens because maf2maf uses maf2vcf to create a deduplicated multi-sample VCF for VEP, and FILTER tags are necessarily merged across samples. The solution might be to add FILTER as one of the arguments to --retain-cols.
@ckandoth ckandoth added the bug label Sep 28, 2017
@ckandoth ckandoth self-assigned this Sep 28, 2017
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