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WARNING: 51499 : Use of uninitialized value in subtraction (-) #182

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DadongZ opened this issue Jul 18, 2018 · 1 comment
Open

WARNING: 51499 : Use of uninitialized value in subtraction (-) #182

DadongZ opened this issue Jul 18, 2018 · 1 comment

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@DadongZ
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DadongZ commented Jul 18, 2018

I got many warnings from converting my mutect2's output vcf to maf such like

WARNING: 51420 : Use of uninitialized value in subtraction (-) at /home.local/dz33/ensembl-vep/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/VariationTabix.pm line 184, <VARS> line 1.
Use of uninitialized value in addition (+) at /home.local/dz33/ensembl-vep/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/VariationTabix.pm line 184, <VARS> line 1.
WARNING: 51418 : Use of uninitialized value in subtraction (-) at /home.local/dz33/ensembl-vep/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/VariationTabix.pm line 184, <VARS> line 1.
Use of uninitialized value in addition (+) at /home.local/dz33/ensembl-vep/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/VariationTabix.pm line 184, <VARS> line 1.
WARNING: 51414 : Use of uninitialized value in subtraction (-) at /home.local/dz33/ensembl-vep/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/VariationTabix.pm line 184, <VARS> line 1.
Use of uninitialized value in addition (+) at /home.local/dz33/ensembl-vep/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/VariationTabix.pm line 184, <VARS> line 1.

What are the concerns behind them?

@JLiandbear
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See same warning here. Wondering whether it's a real concern or harmless?

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