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Infer Frame from breakend format for SVs #217

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ckandoth opened this issue Mar 16, 2019 · 0 comments
Open

Infer Frame from breakend format for SVs #217

ckandoth opened this issue Mar 16, 2019 · 0 comments
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@ckandoth
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VCF specs define the breakend format as follows:

REF ALT   Meaning
s   t[p[  piece extending to the right of p is joined after t
s   t]p]  reverse comp piece extending left of p is joined after t
s   ]p]t  piece extending to the left of p is joined before t
s   [p[t  reverse comp piece extending right of p is joined before t

This should map to Frame info as follows:

t[p[    5to3
t]p]    3to3
]p]t    3to5
[p[t    5to5
@ckandoth ckandoth self-assigned this Mar 16, 2019
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