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committedNov 19, 2024·
Update test imports
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-7
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‎tests/test_hgvs_parser.py

+2-2
Original file line numberDiff line numberDiff line change
@@ -5,12 +5,12 @@
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66
import pytest
77

8-
from mutalyzer_hgvs_parser.hgvs_parser import HgvsParser
8+
from mutalyzer_hgvs_parser.hgvs_parser import get_parser
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@pytest.fixture
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def grammar():
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return HgvsParser()
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return get_parser()
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@pytest.fixture

‎tests/test_syntax.py

+5-5
Original file line numberDiff line numberDiff line change
@@ -5,13 +5,13 @@
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import pytest
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from mutalyzer_hgvs_parser.exceptions import UnexpectedCharacter, UnexpectedEnd
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from mutalyzer_hgvs_parser.hgvs_parser import HgvsParser
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from mutalyzer_hgvs_parser.hgvs_parser import get_parser
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@pytest.fixture
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def parser():
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def parse(description):
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parse_tree = HgvsParser().parse(description)
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parse_tree = get_parser().parse(description)
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if parse_tree is None:
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pytest.fail("failed to parse: `%s`" % description)
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@@ -251,12 +251,12 @@ def test_incorrect_syntax(parser, description):
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The parser should fail for these descriptions.
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"""
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with pytest.raises(Exception):
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HgvsParser().parse(description)
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get_parser().parse(description)
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def test_unexpected_end():
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try:
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HgvsParser().parse("REF:g.1de")
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get_parser().parse("REF:g.1de")
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except UnexpectedEnd as e:
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s = e.serialize()
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assert s["pos_in_stream"] == 8
@@ -271,7 +271,7 @@ def test_unexpected_end():
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def test_unexpected_character():
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try:
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HgvsParser().parse("REF_1:g.pter_100delins[REF_2:g.]")
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get_parser().parse("REF_1:g.pter_100delins[REF_2:g.]")
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except UnexpectedCharacter as e:
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s = e.serialize()
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assert s["pos_in_stream"] == 31

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