Version 1.6.0

Various improvements:

• FlyWire l2 functions: general speed ups and more robust
• flywire.get_somas now accepts neurons in which case these neurons will have their somas set directly
• flywire.neuron_to_segments now optionally returns a short summary (see short=True parameter)
• FlyWire connectivity queries now allow restricting query to specific neuropils

See commit history for a full list of changes.

Version 1.5.1

Fixes a bug in flywire.supervoxels_to_roots.

Version 1.5.0

• flywire.fetch_synapses can now return neuropils
• updated docs (see the new FlyWire tutorials)
• made many functions more robust against timeouts
• fixed a few bugs

Version 1.4.0

Improvements to FlyWire interface:

• new/improved functions to pull/use the L2 cache (e.g. flywire.l2_dotprops and flywire.l2_info)
• new functions to interact with annotation tables (e.g. flywire.get_annotations and flywire.create_annotation_table)
• all synapse queries now use the annotation framework (instead of the Itanna service on spine)
• flywire.skeletonize_neuron now uses the nucleus segmentation to identify somas (see also flywire.get_somas)
• various small fixes and improvements

Version 1.3.2

Hot fix for fafbseg.flywire.merge_flywire_neuron

Version 1.3.1

This is a bugfix release.

Version 1.3.0

• new function to fetch FlyWire L2 skeletons: fafbseg.flywire.l2_skeleton
• improved FlyWire connectivity fetching
• new and improved function to skeletonise FlyWire neurons
• follow changes to FlyWire secret in cloud-volume
• many more fixes

Version 1.2.1

Hot fix for fafbseg.move.merge_into_catmaid.

Version 1.2.0

With this version, we mostly improve integration of Buhmann et al. (2019) synapse data and make a first step towards working with the Eckstein et al. (2020) transmitters predictions:

• new functions: fafbseg.flywire.fetch_synapses, fafbseg.flywire.predict_transmitter and fafbseg.synapses.plot_nt_predictions (see docs for details)
• added a on-disk cache for fafbseg.flywire.roots_to_supervoxels (on by default) and fafbseg.flywire.supervoxels_to_root (off by default)
• couple small and big bug fixes

Version 1.1.0

• integrate FAFB14 <-> FlyWire transforms with navis.xform_brain
• first pass at Buhmann synapse queries
• better interface with spine
• various bug fixes