diff --git a/docs/source/tutorials/neurons_intro.ipynb b/docs/source/tutorials/neurons_intro.ipynb index 2e9eff49..2ae4d065 100755 --- a/docs/source/tutorials/neurons_intro.ipynb +++ b/docs/source/tutorials/neurons_intro.ipynb @@ -11,7 +11,9 @@ "Neuron types\n", "============\n", "\n", - "Neurons in ``navis`` come in four flavours:\n", + "Depending your data/workflows you will use different ways to represent neurons. If, for example, you work with light-level data you might end up with point clouds or skeletons whereas modern connectomes typically provide meshes.\n", + "\n", + "To cater for these different data types neurons in ``navis`` come in four flavours:\n", "\n", ".. list-table::\n", " :widths: 10 20 20\n", diff --git a/docs/source/whats_new.rst b/docs/source/whats_new.rst index 3e0baa65..6204e3bb 100644 --- a/docs/source/whats_new.rst +++ b/docs/source/whats_new.rst @@ -17,15 +17,22 @@ repository. - * - dev - ongoing + - - + * - 1.4.0 + - 21/12/22 - - BREAKING: ``navis.flow_centrality`` was renamed to :func:`navis.synapse_flow_centrality` and a new non-synaptic :func:`navis.flow_centrality` function was added. This also - impacts :func:`navis.split_axon_dendrite` in that you should start - using `metric='synapse_flow_centrality'`! + impacts the ``method`` parameter in :func:`navis.split_axon_dendrite`! + - `vispy` is now a soft dependency - new function: :func:`navis.read_tiff` to read image stacks from TIFF files - NBLASTs: single progress bar instead of one for each process - new ``via`` parameter for :func:`navis.xform_brain` - new utility function: :func:`navis.nbl.extract_matches` - - various bug fixes + - :func:`navis.write_swc` can now save Dotprops to SWC files + - :func:`navis.make_dotprops` can now downsample point cloud inputs + - various improvements to :func:`navis.split_axon_dendrite`, :func:`navis.nblast_allbyall`, + :func:`navis.interfaces.neuprint.fetch_mesh_neuron`, :func:`navis.interfaces.neuprint.fetch_skeletons` + - tons of bug fixes * - 1.3.1 - 10/06/06 - - fixed various bugs