From 57e7152670d3033ca7037acb104efed9f9d96d06 Mon Sep 17 00:00:00 2001 From: Philipp Schlegel Date: Tue, 27 Aug 2024 11:30:23 +0100 Subject: [PATCH] a number of small fixes --- docs/index.md | 4 ++-- docs/preparing.md | 5 +++++ docs/schedule.md | 4 ++-- 3 files changed, 9 insertions(+), 4 deletions(-) diff --git a/docs/index.md b/docs/index.md index 5fdff70..1c6026d 100644 --- a/docs/index.md +++ b/docs/index.md @@ -1,6 +1,6 @@ # :material-language-python: NeuroPython 2024 -Welcome to NeuroPython 2024, _Analysis and Integration of Single-Cell Neuronal Data in Python_ :wave: +Welcome to NeuroPython 2024: _Analysis and Integration of Single-Cell Neuronal Data in Python_ :wave: This is free two-day workshop introducing computational workflows for the analysis and integration of electrophysiological, morphological, and transcriptomic data of neurons using Python. We will cover the packages [`Pynapple`](https://github.com/pynapple-org/pynapple), [`NeMoS`](https://github.com/flatironinstitute/nemos), [`Navis`](https://github.com/navis-org/navis), and [`CAJAL`](https://github.com/CamaraLab/CAJAL), providing a hands-on experience with these tools using public Patch-clamp and Patch-seq datasets. @@ -15,4 +15,4 @@ Registration is still open via [Google Forms](https://forms.gle/twx3ne3HHoV48eMS ## :rocket: Already signed up? -Great! Then head over to [Preparations](preparing.md) to learn about what you need to do _before_ the workshop to set things up. +Great! Then head over to [Preparations](preparing.md) to learn about what you need to do _before_ the workshop to make sure you're all set. diff --git a/docs/preparing.md b/docs/preparing.md index cdea8ad..d7a116d 100644 --- a/docs/preparing.md +++ b/docs/preparing.md @@ -1,5 +1,7 @@ # :fontawesome-solid-computer: Preparations +## Setup Python + The workshop will consist of a mix of introductory talks for the individual Python packages and a number of interactive coding sessions - see the [Schedule](schedule.md) for details. You are welcome to just cruise :sailboat: along but to make the most of it you will probably want to follow the coding and participate in the exercises on your own machine. @@ -51,3 +53,6 @@ In addition, we have prepared setup instructions for the four different Python p +## Download the Data + +_TODO_ \ No newline at end of file diff --git a/docs/schedule.md b/docs/schedule.md index 31ccdb5..a8fcbfa 100644 --- a/docs/schedule.md +++ b/docs/schedule.md @@ -9,14 +9,14 @@ The schedule is split over two days and centered around noon on the US east coas | 11:00am - 1:00pm | **Analysis of Electrophysiological Data using Pynapple and NeMos** _Instructors: Edoardo Balzani (Flatiron), Adrien Peyrache (McGill), Guillaume Viejo (Flatiron), Alex Williams (NYU)_ | | 1:00pm - 1:30pm | **Break** | | 1:30pm - 3:30pm | **Analysis and Visualization of Neuronal Morphologies using Navis** _Instructor: Philipp Schlegel (Cambridge U.)_ | -| | Add to calendar: [Google Calendar](https://calendar.google.com/calendar/render?action=TEMPLATE&dates=20240925T144500Z%2F20240925T183000Z&details=&location=Online&text=NeuroPython%202024) • [Outlook](https://outlook.live.com/calendar/0/action/compose?allday=false&body=&enddt=2024-09-25T19%3A30%3A00&location=Online&path=%2Fcalendar%2Faction%2Fcompose&rru=addevent&startdt=2024-09-25T15%3A45%3A00&subject=NeuroPython%202024) • [Office 365](https://outlook.office.com/calendar/0/action/compose?allday=false&body=&enddt=2024-09-25T19%3A30%3A00&location=Online&path=%2Fcalendar%2Faction%2Fcompose&rru=addevent&startdt=2024-09-25T15%3A45%3A00&subject=NeuroPython%202024) | +| | Add day 1 to calendar: [Google Calendar](https://calendar.google.com/calendar/render?action=TEMPLATE&dates=20240925T144500Z%2F20240925T183000Z&details=&location=Online&text=NeuroPython%202024) • [Outlook](https://outlook.live.com/calendar/0/action/compose?allday=false&body=&enddt=2024-09-25T19%3A30%3A00&location=Online&path=%2Fcalendar%2Faction%2Fcompose&rru=addevent&startdt=2024-09-25T15%3A45%3A00&subject=NeuroPython%202024) • [Office 365](https://outlook.office.com/calendar/0/action/compose?allday=false&body=&enddt=2024-09-25T19%3A30%3A00&location=Online&path=%2Fcalendar%2Faction%2Fcompose&rru=addevent&startdt=2024-09-25T15%3A45%3A00&subject=NeuroPython%202024) | | | | | **Day 2 (09/23)** | | | 10:50am - 11:00am | **Welcome and Introduction to Day 2** | | 11:00am - 1:00pm | **Analysis and Integration of Single-Cell Morphology, Electrophysiology, and Transcriptomic Data using CAJAL** _Instructors: Pablo Camara (UPenn), Patrick Nicodemus (UPenn)_ | | 1:00pm - 1:30pm | **Break** | | 1:30pm - 2:30pm | **Open Discussion** | -| | Add to calendar: [Google Calendar](https://calendar.google.com/calendar/render?action=TEMPLATE&dates=20240924T144500Z%2F20240924T183000Z&details=&location=Online&text=NeuroPython%202024) • [Outlook](https://outlook.live.com/calendar/0/action/compose?allday=false&body=&enddt=2024-09-24T19%3A30%3A00&location=Online&path=%2Fcalendar%2Faction%2Fcompose&rru=addevent&startdt=2024-09-24T15%3A45%3A00&subject=NeuroPython%202024) • [Office 365](https://outlook.office.com/calendar/0/action/compose?allday=false&body=&enddt=2024-09-24T19%3A30%3A00&location=Online&path=%2Fcalendar%2Faction%2Fcompose&rru=addevent&startdt=2024-09-24T15%3A45%3A00&subject=NeuroPython%202024) | +| | Add day 2 to calendar: [Google Calendar](https://calendar.google.com/calendar/render?action=TEMPLATE&dates=20240924T144500Z%2F20240924T183000Z&details=&location=Online&text=NeuroPython%202024) • [Outlook](https://outlook.live.com/calendar/0/action/compose?allday=false&body=&enddt=2024-09-24T19%3A30%3A00&location=Online&path=%2Fcalendar%2Faction%2Fcompose&rru=addevent&startdt=2024-09-24T15%3A45%3A00&subject=NeuroPython%202024) • [Office 365](https://outlook.office.com/calendar/0/action/compose?allday=false&body=&enddt=2024-09-24T19%3A30%3A00&location=Online&path=%2Fcalendar%2Faction%2Fcompose&rru=addevent&startdt=2024-09-24T15%3A45%3A00&subject=NeuroPython%202024) | _All times are in EDT (Eastern Daylight Time), i.e. time in New York or Washington DC!_