Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

How to get CHR & POS info on Hg38 using rs Id information? #24

Open
Mahantesh-Biradar opened this issue Oct 12, 2021 · 2 comments
Open

How to get CHR & POS info on Hg38 using rs Id information? #24

Mahantesh-Biradar opened this issue Oct 12, 2021 · 2 comments

Comments

@Mahantesh-Biradar
Copy link

I have a list of SNP rs ids (>1M) for which I would like to find the CHR & POS information. Can you please suggest a suitable tutorial or Jupyter notebook? Thanks in advance
@standage
Copy link

I developed the rsidx package for this purpose, although I've never scaled it up to >1M rsids in a single query. It might need to be broken up into smaller batches, but should still give very good performance.

@Mahantesh-Biradar
Copy link
Author

Thanks, Daniel, let me give it a try.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@standage @Mahantesh-Biradar