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Integrate Jalview for the visualisation of AlphaFold2 and Colabfold results #86

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athbaltzis opened this issue Mar 26, 2023 · 1 comment
Open

Integrate Jalview for the visualisation of AlphaFold2 and Colabfold results #86

athbaltzis opened this issue Mar 26, 2023 · 1 comment
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@athbaltzis
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enhancement Improvement for existing functionality

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@athbaltzis
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Description of feature

Jalview is a free cross-platform program for multiple sequence alignment visualisation and analysis. Its integration into the AlphaFold2 and Colabfold workflows of the pipeline can contribute to a more informative visualisation of the results.
@athbaltzis athbaltzis added the enhancement Improvement for existing functionality label Mar 26, 2023
@athbaltzis athbaltzis added this to the 1.1.0 milestone Mar 26, 2023
@athbaltzis athbaltzis self-assigned this Mar 26, 2023
@athbaltzis athbaltzis moved this from Todo to In Progress in nf-core Hackathon March 2023 Mar 26, 2023
@athbaltzis athbaltzis changed the title Integrate Jalview for the visualisation of AlphaFold2 and Colabfold workflows Integrate Jalview for the visualisation of AlphaFold2 and Colabfold results Mar 27, 2023
@athbaltzis athbaltzis removed this from the 1.1.0 milestone May 3, 2023
@foreveremain
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@athbaltzis @benzoid - we are very close to finishing up Jalview 2.11.3's new CLI so this integration should be doable within the next 2-3 weeks. @benzoid will follow up on slack.

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@athbaltzis athbaltzis

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enhancement Improvement for existing functionality
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nf-core Hackathon March 2023
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@foreveremain @athbaltzis