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So after a lot of digging its actually the way it is supposed to be (at the moment)
Currently we run a new template when we have a new object (this would be the "some rare individual targets") however we do not re-make templates of targets that already have a template (mostly because we would need to re-run all old data through the telluric+ccf+lbl process again).
So this is a fundamental problem with the online reduction when we have a new target - we observe it once and then make a template and then do not make a template again.
Note with the offline reduction this isn't a problem as we have all previous observations.
There are two short term solutions:
We some how find out all objects that have templates that need updating and then run a science_run.ini that runs the telluric+ccf+lbl steps again for all observations (maybe a flag in apero checks or something?)
We wait for the next offline reduction
With the current manual trigger (reducing night-by-night) its pretty hard to make it them get all nights for some targets.
Starting december 31st, there are almost no recipe for mk_template, except for some rare individual targets.
The last significant number of mk_tellu were executed on december 30, using the "offline_fix_run.ini"
-->We should be getting a mk_template for each target per manual_trigger.
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