Adding config

Author: nfultz

inst/config/amax.R

@@ -0,0 +1,91 @@
+amax.config <- list(
+  
+  atlas.rh=list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/atlas/:/usr/lib64/R/lib",
+  ),
+  
+  atlas.rh.serial=list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/atlas-serial/:/usr/lib64/R/lib",
+  ),
+  
+  atlas.build = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/atlas-build/:/usr/lib64/R/lib",
+  ),
+  
+  atlas.build.serial =list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/atlas-build-serial/:/usr/lib64/R/lib",
+  ),
+  
+  gpuR = list(
+    
+    
+  ),
+  
+  mkl.1 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/mkl:/opt/intel/lib/intel64:/opt/intel/mkl/lib/intel64/:/usr/lib64/R/lib",
+    MKL_NUM_THREADS="1"
+  ),
+  mkl.2 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/mkl:/opt/intel/lib/intel64:/opt/intel/mkl/lib/intel64/:/usr/lib64/R/lib",
+    MKL_NUM_THREADS="2"
+  ),
+  mkl.4 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/mkl:/opt/intel/lib/intel64:/opt/intel/mkl/lib/intel64/:/usr/lib64/R/lib",
+    MKL_NUM_THREADS="4"
+  ),
+  mkl.8 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/mkl:/opt/intel/lib/intel64:/opt/intel/mkl/lib/intel64/:/usr/lib64/R/lib",
+    MKL_NUM_THREADS="8"
+  ),
+  mkl.16 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/mkl:/opt/intel/lib/intel64:/opt/intel/mkl/lib/intel64/:/usr/lib64/R/lib",
+    MKL_NUM_THREADS="16"
+  ),
+  mkl.24 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/mkl:/opt/intel/lib/intel64:/opt/intel/mkl/lib/intel64/:/usr/lib64/R/lib",
+    MKL_NUM_THREADS="24"
+  ),
+  mkl.32 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/mkl:/opt/intel/lib/intel64:/opt/intel/mkl/lib/intel64/:/usr/lib64/R/lib",
+    MKL_NUM_THREADS="32"
+  ),
+  
+  openblas.1 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/openblas:/usr/lib64/R/lib",
+    OPENBLAS_NUM_THREADS=1
+  ),
+  openblas.2 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/openblas:/usr/lib64/R/lib",
+    OPENBLAS_NUM_THREADS=2
+  ),
+  openblas.4 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/openblas:/usr/lib64/R/lib",
+    OPENBLAS_NUM_THREADS=4
+  ),
+  openblas.8 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/openblas:/usr/lib64/R/lib",
+    OPENBLAS_NUM_THREADS=8
+  ),
+  openblas.16 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/openblas:/usr/lib64/R/lib",
+    OPENBLAS_NUM_THREADS=16
+  ),
+  openblas.24 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/openblas:/usr/lib64/R/lib",
+    OPENBLAS_NUM_THREADS=24
+  ),
+  openblas.32 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/openblas:/usr/lib64/R/lib",
+    OPENBLAS_NUM_THREADS=32
+  ),
+  openblas.rh.1 = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/openblas-rh:/usr/lib64/R/lib",
+    OPENBLAS_NUM_THREADS=1
+  ),
+  reference = list(
+    R_LD_LIBRARY_PATH="/home/nfultz/rcfg/reference:/usr/lib64/R/lib"
+  )
+  
+  
+)
+

inst/scripts/benchmark.r

@@ -67,7 +67,7 @@ ref <- as.numeric(system(cmd, intern=TRUE))
 # done
 
 #  R_LD_LIBRARY_PATH="$PWD/openblas:/usr/lib64/R/lib" OPENBLAS_NUM_THREADS=10 R
-# r(function()system.time(crossprod(matrix(1:1e9, ncol=1000))), env=c(rcmd_safe_env(), R_LD_LIBRARY_PATH="/home/nfultz/rcfg/openblas:/usr/lib64/R/lib", OPENBLAS_NUM_THREADS="3"))
+#r(function()system.time(crossprod(matrix(1:1e9, ncol=10000))), env=c(rcmd_safe_env(), R_LD_LIBRARY_PATH="/home/nfultz/rcfg/openblas-rh:/usr/lib64/R/lib", OPENBLAS_NUM_THREADS="1"))
 
 
 atlas      <- as.numeric(system(cmd,      intern=TRUE))