Installation on Mac OS 15.1 EGSnrc #1227

erjft · 2024-11-27T10:59:04Z

erjft
Nov 27, 2024

configure-osx-edwardt.log
configure-osx.log
Hi all, I have been reading about the install instructions on https://github.com/nrc-cnrc/EGSnrc/wiki/Install-EGSnrc-on-macOS on my Mac M1 Pro, OS 15.1.1 Sequoia
When using the standard Mac settings for gfortan:

edwardt@onc-0986 EGSnrc % gfortran --version
GNU Fortran (MacPorts gcc12 12.3.0_4+stdlib_flag) 12.3.0
Copyright (C) 2022 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

and when installing EGSnrc I ran into the issue described in #642
I then had a look in:
edwardt@onc-0986 EGSnrc % ls /opt/homebrew/Cellar/gcc/14.2.0_1/bin

aarch64-apple-darwin24-c++-14		aarch64-apple-darwin24-gcc-ranlib-14	g++-14					gcov-14					gm2
aarch64-apple-darwin24-g++-14		aarch64-apple-darwin24-gfortran-14	gcc-14					gcov-dump-14				gm2-14
aarch64-apple-darwin24-gcc-14		aarch64-apple-darwin24-gm2-14		gcc-ar-14				gcov-tool-14				lto-dump-14
aarch64-apple-darwin24-gcc-ar-14	c++-14					gcc-nm-14				gfortran
aarch64-apple-darwin24-gcc-nm-14	cpp-14					gcc-ranlib-14				gfortran-14

and tried using different gfortran, gcc and g++ settings by directly putting these file paths in the ./HEN_HOUSE/scripts/configure step:

This would always result in:

Compiling ctcreate ...                            Failed
Compiling statdose ...                            OK
Compiling readphsp ...                            OK
Compiling dosxyz_show ...                         Failed

Input C++ compiler:                               [g++]: /opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14

The C++ configuration file egspp_osx.conf already exists!
Do you want to overwrite? (yes/no)                yes
sed: 1: ":/:_:g": unused label '/:_:g'

Creating C++ config file ...                      OK
Building the IAEA phase space library ...         Failed
Building the EGSnrc C++ class library ...         Failed

and in the compilation stage:
Compiling mevegs ... failed

I try to go into cavity and run and it says:

edwardt@onc-0986 cavity % cavity -i example1.egsinp 
In EGS_Application::initSimulation()
EGS_Library::load(): failed to load library /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so
  error was: dlopen(/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so, 0x0001): tried: '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx//libegs_planes.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so' (no such file)
createSingleGeometry: Failed to load library 'egs_planes' from /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx
EGS_Library::load(): failed to load library /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so
  error was: dlopen(/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so, 0x0001): tried: '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx//libegs_cylinders.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so' (no such file)
createSingleGeometry: Failed to load library 'egs_cylinders' from /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx
EGS_Library::load(): failed to load library /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so
  error was: dlopen(/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so, 0x0001): tried: '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx//libegs_ndgeometry.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so' (no such file)
createSingleGeometry: Failed to load library 'egs_ndgeometry' from /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx
EGS_Library::load(): failed to load library /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so
  error was: dlopen(/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so, 0x0001): tried: '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx//libegs_planes.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_planes.so' (no such file)
createSingleGeometry: Failed to load library 'egs_planes' from /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx
EGS_Library::load(): failed to load library /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so
  error was: dlopen(/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so, 0x0001): tried: '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx//libegs_cylinders.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_cylinders.so' (no such file)
createSingleGeometry: Failed to load library 'egs_cylinders' from /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx
EGS_Library::load(): failed to load library /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so
  error was: dlopen(/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so, 0x0001): tried: '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx//libegs_ndgeometry.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so' (no such file), '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegs_ndgeometry.so' (no such file)
createSingleGeometry: Failed to load library 'egs_ndgeometry' from /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx
EGS_BaseGeometry::createGeometry: errors during geometry definition

Going into egs++ and doing

make clean
make -j 10

results in

/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../lib/osx -DOSX  -DBUILD_DLL -O2 -mtune=native  -std=c++14 -c -o dso/osx/egs_particle_track.o egs_particle_track.cpp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../lib/osx -DOSX  -DBUILD_DLL -O2 -mtune=native  -std=c++14 -c -o dso/osx/egs_fortran_geometry.o egs_fortran_geometry.cpp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../lib/osx -DOSX  -DBUILD_DLL -O2 -mtune=native  -std=c++14 -c -o dso/osx/egs_ensdf.o egs_ensdf.cpp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../lib/osx -DOSX  -DBUILD_DLL -O2 -mtune=native  -std=c++14 -dynamiclib dso/osx/egs_input.o dso/osx/egs_base_geometry.o dso/osx/egs_library.o dso/osx/egs_transformations.o dso/osx/egs_rndm.o dso/osx/egs_shapes.o dso/osx/egs_geometry_tester.o dso/osx/egs_timer.o dso/osx/egs_polygon.o dso/osx/egs_projectors.o dso/osx/egs_alias_table.o dso/osx/egs_object_factory.o dso/osx/egs_spectra.o dso/osx/egs_base_source.o dso/osx/egs_functions.o dso/osx/egs_application.o dso/osx/egs_run_control.o dso/osx/egs_scoring.o dso/osx/egs_interpolator.o dso/osx/egs_atomic_relaxations.o dso/osx/egs_ausgab_object.o dso/osx/egs_particle_track.o dso/osx/egs_fortran_geometry.o dso/osx/egs_ensdf.o -o /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx/libegspp.dylib -ldl 
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../lib/osx -DOSX  -O2 -mtune=native  -std=c++14 -o /Users/edwardt/Documents/EGSnrc/HEN_HOUSE/bin/osx/egspp dso/osx/egspp.o -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx -legspp
cd geometry/egs_planes && make
cd geometry/egs_cd_geometry && make
cd geometry/egs_gtransformed && make
cd geometry/egs_nd_geometry && make
cd geometry/egs_box && make
cd geometry/egs_genvelope && make
cd geometry/egs_spheres && make
cd geometry/egs_cylinders && make
cd geometry/egs_iplanes && make
make[1]: Entering directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_planes'
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_PLANES_DLL -O2 -mtune=native  -std=c++14 -qmkshrobj -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_planes.o -o ../../dso/osx/libegs_planes.so -ldl  -legspp
g++-14: error: unrecognized command-line option '-qmkshrobj'
make[1]: *** [/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/specs/egspp_libs.spec:38: ../../dso/osx/libegs_planes.so] Error 1
make[1]: Leaving directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_planes'
make: *** [Makefile:187: egs_planes] Error 2
make: *** Waiting for unfinished jobs....
make[1]: Entering directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_nd_geometry'
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_NDG_DLL -DEXPLICIT_XYZ  -O2 -mtune=native  -std=c++14 -c -o ../../dso/osx/egs_nd_geometry.o egs_nd_geometry.cpp
make[1]: Entering directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_gtransformed'
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_GTRANSFORMED_DLL -O2 -mtune=native  -std=c++14 -c -o ../../dso/osx/egs_gtransformed.o egs_gtransformed.cpp
make[1]: Entering directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_iplanes'
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_IPLANES_DLL -O2 -mtune=native  -std=c++14 -c -o ../../dso/osx/egs_iplanes.o egs_iplanes.cpp
make[1]: Entering directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_box'
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_BOX_DLL -O2 -mtune=native  -std=c++14 -c -o ../../dso/osx/egs_box.o egs_box.cpp
make[1]: Entering directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_genvelope'
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_ENVELOPEG_DLL -O2 -mtune=native  -std=c++14 -c -o ../../dso/osx/egs_envelope_geometry.o egs_envelope_geometry.cpp
make[1]: Entering directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_cd_geometry'
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_CDGEOMETRY_DLL -O2 -mtune=native  -std=c++14 -c -o ../../dso/osx/egs_cd_geometry.o egs_cd_geometry.cpp
make[1]: Entering directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_cylinders'
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_CYLINDERS_DLL -O2 -mtune=native  -std=c++14 -c -o ../../dso/osx/egs_cylinders.o egs_cylinders.cpp
make[1]: Entering directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_spheres'
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_SPHERES_DLL -O2 -mtune=native  -std=c++14 -c -o ../../dso/osx/egs_spheres.o egs_spheres.cpp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_BOX_DLL -O2 -mtune=native  -std=c++14 -dynamiclib -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_box.o -o ../../dso/osx/libegs_box.dylib -ldl  -legspp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_BOX_DLL -O2 -mtune=native  -std=c++14 -qmkshrobj -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_box.o -o ../../dso/osx/libegs_box.so -ldl  -legspp
g++-14: error: unrecognized command-line option '-qmkshrobj'
make[1]: *** [/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/specs/egspp_libs.spec:38: ../../dso/osx/libegs_box.so] Error 1
make[1]: *** Waiting for unfinished jobs....
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_GTRANSFORMED_DLL -O2 -mtune=native  -std=c++14 -dynamiclib -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_gtransformed.o -o ../../dso/osx/libegs_gtransformed.dylib -ldl  -legspp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_SPHERES_DLL -O2 -mtune=native  -std=c++14 -dynamiclib -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_spheres.o -o ../../dso/osx/libegs_spheres.dylib -ldl  -legspp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_GTRANSFORMED_DLL -O2 -mtune=native  -std=c++14 -qmkshrobj -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_gtransformed.o -o ../../dso/osx/libegs_gtransformed.so -ldl  -legspp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_SPHERES_DLL -O2 -mtune=native  -std=c++14 -qmkshrobj -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_spheres.o -o ../../dso/osx/libegs_spheres.so -ldl  -legspp
g++-14: error: unrecognized command-line option '-qmkshrobj'
make[1]: *** [/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/specs/egspp_libs.spec:38: ../../dso/osx/libegs_spheres.so] Error 1
make[1]: *** Waiting for unfinished jobs....
g++-14: error: unrecognized command-line option '-qmkshrobj'
make[1]: *** [/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/specs/egspp_libs.spec:38: ../../dso/osx/libegs_gtransformed.so] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_box'
make: *** [Makefile:187: egs_box] Error 2
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_IPLANES_DLL -O2 -mtune=native  -std=c++14 -dynamiclib -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_iplanes.o -o ../../dso/osx/libegs_iplanes.dylib -ldl  -legspp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_IPLANES_DLL -O2 -mtune=native  -std=c++14 -qmkshrobj -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_iplanes.o -o ../../dso/osx/libegs_iplanes.so -ldl  -legspp
make[1]: Leaving directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_spheres'
make: *** [Makefile:187: egs_spheres] Error 2
g++-14: error: unrecognized command-line option '-qmkshrobj'
make[1]: *** [/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/specs/egspp_libs.spec:38: ../../dso/osx/libegs_iplanes.so] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_gtransformed'
make: *** [Makefile:187: egs_gtransformed] Error 2
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_CYLINDERS_DLL -O2 -mtune=native  -std=c++14 -dynamiclib -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_cylinders.o -o ../../dso/osx/libegs_cylinders.dylib -ldl  -legspp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_CYLINDERS_DLL -O2 -mtune=native  -std=c++14 -qmkshrobj -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_cylinders.o -o ../../dso/osx/libegs_cylinders.so -ldl  -legspp
g++-14: error: unrecognized command-line option '-qmkshrobj'
make[1]: *** [/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/specs/egspp_libs.spec:38: ../../dso/osx/libegs_cylinders.so] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_iplanes'
make: *** [Makefile:187: egs_iplanes] Error 2
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_CDGEOMETRY_DLL -O2 -mtune=native  -std=c++14 -dynamiclib -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_cd_geometry.o -o ../../dso/osx/libegs_cdgeometry.dylib -ldl  -legspp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_CDGEOMETRY_DLL -O2 -mtune=native  -std=c++14 -qmkshrobj -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_cd_geometry.o -o ../../dso/osx/libegs_cdgeometry.so -ldl  -legspp
g++-14: error: unrecognized command-line option '-qmkshrobj'
make[1]: *** [/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/specs/egspp_libs.spec:38: ../../dso/osx/libegs_cdgeometry.so] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_cylinders'
make: *** [Makefile:187: egs_cylinders] Error 2
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_ENVELOPEG_DLL -O2 -mtune=native  -std=c++14 -dynamiclib -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_envelope_geometry.o -o ../../dso/osx/libegs_genvelope.dylib -ldl  -legspp
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_ENVELOPEG_DLL -O2 -mtune=native  -std=c++14 -qmkshrobj -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_envelope_geometry.o -o ../../dso/osx/libegs_genvelope.so -ldl  -legspp
g++-14: error: unrecognized command-line option '-qmkshrobj'
make[1]: *** [/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/specs/egspp_libs.spec:38: ../../dso/osx/libegs_genvelope.so] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_cd_geometry'
make: *** [Makefile:187: egs_cd_geometry] Error 2
make[1]: Leaving directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_genvelope'
make: *** [Makefile:187: egs_genvelope] Error 2
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_NDG_DLL -DEXPLICIT_XYZ  -O2 -mtune=native  -std=c++14 -dynamiclib -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_nd_geometry.o -o ../../dso/osx/libegs_ndgeometry.dylib -ldl  -legspp -legs_planes
/opt/homebrew/Cellar/gcc/14.2.0_1/bin/g++-14 -I../../../lib/osx -I../.. -DOSX  -DBUILD_NDG_DLL -DEXPLICIT_XYZ  -O2 -mtune=native  -std=c++14 -qmkshrobj -L/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/dso/osx ../../dso/osx/egs_nd_geometry.o -o ../../dso/osx/libegs_ndgeometry.so -ldl  -legspp -legs_planes
g++-14: error: unrecognized command-line option '-qmkshrobj'
make[1]: *** [/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/specs/egspp_libs.spec:38: ../../dso/osx/libegs_ndgeometry.so] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory '/Users/edwardt/Documents/EGSnrc/HEN_HOUSE/egs++/geometry/egs_nd_geometry'
make: *** [Makefile:187: egs_nd_geometry] Error 2

The same happens when using /Library/Developer/CommandLineTools/usr/bin/g++ with /Library/Developer/CommandLineTools/usr/bin/gcc
I was wondering how I might make it such that I don't get fail messages, its not pivotal that everything works but would be nice to know it all could work

I have also tried other gfortran versions 11, and 12 - both just failed instantly in the same way as below
I have also tried other gcc versions 11 and 12 in combination with gfortran 14, both of these say:

Compiling beamdp ...                              OK
Compiling ctcreate ...                            Skipping (no C compiler)
Compiling statdose ...                            OK
Compiling readphsp ...                            OK
Compiling dosxyz_show ...                         Skipping (no C compiler)
Compiling addphsp ...                             OK

 Compiling cavity ...                          Skipping (no egs++ installation)
    Compiling cavrznrc ...                        failed
    Compiling cavsphnrc ...                       OK
    Compiling dosrznrc ...                        failed
    Compiling dosxyznrc ...                       failed
    Compiling edknrc ...                          OK
    Compiling egs_app ...                         Skipping (no egs++ installation)
    Compiling egs_cbct ...                        Skipping (no egs++ installation)
    Compiling egs_chamber ...                     Skipping (no egs++ installation)
    Compiling egs_fac ...                         Skipping (no egs++ installation)
    Compiling egs_kerma ...                       Skipping (no egs++ installation)
    Compiling egs_phd ...                         Skipping (no egs++ installation)
    Compiling examin ...                          OK
    Compiling flurznrc ...                        failed

Answered by rtownson

Nov 27, 2024

Looks like these lines in HEN_HOUSE/scripts/configure_c++ need to change, to include whatever the option is to compile a shared library:

        case $CXX in
            g++*) shared_bundle="-bundle" ;;
            *)   shared_bundle="-qmkshrobj" ;; # assume xlC
        esac

View full answer

erjft · 2024-11-27T14:03:32Z

erjft
Nov 27, 2024
Author

In addition:

Input fortran compiler:                           [gfortran] aarch64-apple-darwin21-gfortran-12
Testing if aarch64-apple-darwin21-gfortran-12 works ... yes. Object extension is 'o'
Testing if aarch64-apple-darwin21-gfortran-12 can create executables ... no
error: this FORTRAN compiler can not create executables!
edwardt@onc-0986 EGSnrc %

With just the
Input fortran compiler: [gfortran] /opt/homebrew/Cellar/gcc/14.2.0_1/bin/gfortran-14
and the standard
Input C compiler: [gcc] gcc
Input C++ compiler: [g++]: g++
results in:

Compiling ctcreate ...                            Failed
Compiling statdose ...                            OK
Compiling readphsp ...                            OK
Compiling dosxyz_show ...                         Failed

The C++ configuration file egspp_osx.conf already exists!
Do you want to overwrite? (yes/no)                yes
sed: 1: ":/:_:g": unused label '/:_:g'

 Compiling cavity ...                          Skipping (no egs++ installation)
    Compiling cavrznrc ...                        OK
    Compiling cavsphnrc ...                       OK
    Compiling dosrznrc ...                        OK
    Compiling dosxyznrc ...                       OK
    Compiling edknrc ...                          OK
    Compiling egs_app ...                         Skipping (no egs++ installation)
    Compiling egs_cbct ...                        Skipping (no egs++ installation)
    Compiling egs_chamber ...                     Skipping (no egs++ installation)
    Compiling egs_fac ...                         Skipping (no egs++ installation)
    Compiling egs_kerma ...                       Skipping (no egs++ installation)
    Compiling egs_phd ...                         Skipping (no egs++ installation)
    Compiling examin ...                          OK
    Compiling flurznrc ...                        OK
    Compiling g ...                               OK
    Compiling mevegs ...                          failed
    Compiling ranlux_test ...                     OK
    Compiling ranmar_test ...                     OK
    Compiling sprrznrc ...                        OK
    Compiling tutor1 ...                          OK
    Compiling tutor2 ...                          OK
    Compiling tutor2pp ...                        Skipping (no egs++ installation)

when I try to recompile the egs++ I think it is trying to use gcc12:
/opt/local/lib/gcc12/gcc/arm64-apple-darwin21/12.3.0/include-fixed/math.h:45:10: fatal error: sys/cdefs.h: No such file or directory 45 | #include <sys/cdefs.h>

2 replies

rtownson Nov 27, 2024
Maintainer

Looks like these lines in HEN_HOUSE/scripts/configure_c++ need to change, to include whatever the option is to compile a shared library:

        case $CXX in
            g++*) shared_bundle="-bundle" ;;
            *)   shared_bundle="-qmkshrobj" ;; # assume xlC
        esac

Answer selected by erjft

erjft Nov 28, 2024
Author

Thanks Reid, I realised that putting the fortran compiler to that in home-brew and leaving the gcc and g++ ones as default made it work ok, still with the error for ctcreate, and mevegs, but without the errors for:

Creating C++ config file ...                      OK
Building the IAEA phase space library ...         OK
Building the EGSnrc C++ class library ...         OK

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Installation on Mac OS 15.1 EGSnrc #1227

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Installation on Mac OS 15.1 EGSnrc #1227

erjft Nov 27, 2024

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