_output.yaml

bookdown::gitbook:
  css: template/style.css
  dev: "png"
  split_by: chapter+number #section+number
  split_bib: no
  fig_retina: 1
  toc_depth: 2
  config:
    toc:
      collapse: section
      before: |
        <li><strong><a href="./"> </a></strong></li>
      after: |
        <li><strong><a href="https://github.com/rstudio/bookdown" target="blank">Published with bookdown</a></strong></li>
    download: no
    sharing: no
  pandoc_args: [ "--csl", "template/rjournal.csl" ]
bookdown::pdf_book:
  template: template/monashthesis.tex
  dev: "pdf"
  fig_caption: yes
  fig_height: 3.8
  fig_width: 6.3
  keep_tex: no
  number_sections: yes
  citation_package: default
  pandoc_args: [
    "--top-level-division=chapter", "--csl", "template/rjournal.csl"
  ]
#  citation_package: biblatex ## removed trying to bringing references before appendix