Flatiron Institute

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180 repositories

nemos
Public
NEural MOdelS, a statistical modeling framework for neuroscience.
Python
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MIT License
•8•83•93•4•Updated Nov 28, 2024Nov 28, 2024
disBatch
Public
Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.
distributed-computing batch-processing
Python
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Apache License 2.0
•9•42•7•0•Updated Nov 27, 2024Nov 27, 2024
jenkins-webserver-template
Public
Template repo to serve as recipient of jenkins documentation build pushes
MIT License
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
finufft
Public
Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
C++
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Other
•79•304•53•7•Updated Nov 25, 2024Nov 25, 2024
ManifoldEM
Public
Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data
Python
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GNU General Public License v3.0
•1•7•3•0•Updated Nov 25, 2024Nov 25, 2024
figurl
Public
Shareable, interactive scientific figures in the cloud
Python
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Apache License 2.0
•4•33•2•0•Updated Nov 22, 2024Nov 22, 2024
Cryo-EM-Heterogeneity-Challenge-1
Public
The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge
Jupyter Notebook
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MIT License
•0•6•17•3•Updated Nov 21, 2024Nov 21, 2024
neurosift
Public
Browser-based NWB visualization and DANDI exploration
TypeScript
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Apache License 2.0
•6•46•55•1•Updated Nov 21, 2024Nov 21, 2024
sciware
Public
Learning materials for scientific software development
learning science education software-development
HTML
•35•79•2•0•Updated Nov 21, 2024Nov 21, 2024
FMM3D
Public
Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine.
Fortran
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Other
•39•101•21•1•Updated Nov 21, 2024Nov 21, 2024
stan-playground
Public
Run Stan models in the browser
TypeScript
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Apache License 2.0
•1•36•19•2•Updated Nov 20, 2024Nov 20, 2024
CaImAn
Public
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
2-photon calcium-imaging motion-correction source-extraction deconvolution cnmf
Python
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GNU General Public License v2.0
•370•640•76•9•Updated Nov 20, 2024Nov 20, 2024
aLENS_analysis
Public
Postprocessing & analysis scripts for aLENS data
Jupyter Notebook
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Other
•2•0•0•0•Updated Nov 17, 2024Nov 17, 2024
MutantAutoMate
Public
Python
•1•0•4•2•Updated Nov 15, 2024Nov 15, 2024
CryoLike
Public
Python
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MIT License
•1•5•0•0•Updated Nov 15, 2024Nov 15, 2024
nixpack
Public
nix+spack = nixpack (spanix?)
Nix
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MIT License
•4•39•1•4•Updated Nov 14, 2024Nov 14, 2024
adapol
Public
Adaptive Pole Fitting for Quantum Many-Body Physics
Jupyter Notebook
•1•11•0•0•Updated Nov 14, 2024Nov 14, 2024
spack
Public
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
Python
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Other
•2.3k•2•0•13•Updated Nov 14, 2024Nov 14, 2024
c2py
Public
Clair/c2py low level library
C++
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Apache License 2.0
•1•1•0•0•Updated Nov 14, 2024Nov 14, 2024
clair
Public
Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ
C++
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Apache License 2.0
•2•11•1•0•Updated Nov 14, 2024Nov 14, 2024
flathub
Public
A simple elasticsearch frontend for serving astrophysical simulation catalog data
Haskell
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Apache License 2.0
•6•10•14•0•Updated Nov 13, 2024Nov 13, 2024
FlatironMDCourse
Public
Flatiron Institute MD Course
Jupyter Notebook
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MIT License
•1•6•0•0•Updated Nov 13, 2024Nov 13, 2024
deepblast
Public
Neural Networks for Protein Sequence Alignment
protein-structure language-modeling protein neural-networks protein-sequences sequence-alignment structural-alignments
Python
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BSD 3-Clause "New" or "Revised" License
•21•114•24•8•Updated Nov 11, 2024Nov 11, 2024
neuroRSE
Public
Website for CCN's neuroRSE group
CSS
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MIT License
•0•1•0•0•Updated Nov 11, 2024Nov 11, 2024
jax-finufft
Public
JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library
Python
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Apache License 2.0
•3•81•5•0•Updated Nov 10, 2024Nov 10, 2024
jupyter-remote-desktop-proxy
Public
Run a Linux Desktop on a JupyterHub
Python
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BSD 3-Clause "New" or "Revised" License
•106•0•0•0•Updated Nov 8, 2024Nov 8, 2024
sparse_dot
Public
Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication
python sparse sparse-matrix numpy matrix-multiplication scipy mkl
Python
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MIT License
•11•76•3•0•Updated Nov 7, 2024Nov 7, 2024
lineage_viewer
Public
Graphical interface for editing a lineage and viewing related microscopy images
Python
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BSD 3-Clause "New" or "Revised" License
•1•1•0•1•Updated Nov 7, 2024Nov 7, 2024
PyBenchFramework
Public
BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.
Python
•1•0•0•0•Updated Nov 5, 2024Nov 5, 2024
nifty-ls
Public
A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!
time-series lomb-scargle-periodogram spectral-analysis
Python
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Apache License 2.0
•2•32•4•0•Updated Nov 4, 2024Nov 4, 2024