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    24 repositories

    • medspacy_io

      Public
      A collection of modules to facilitate reading text from various sources and writing to various sources.
      Jupyter Notebook
      •
      MIT License
      •1•1•0•3•Updated Aug 6, 2025Aug 6, 2025

    • medspacy

      Public
      Library for clinical NLP with spaCy.
      nlpspacynlp-libraryclinical-nlppipelinemedspacy
      Jupyter Notebook
      •
      MIT License
      •103•585•28•2•Updated Aug 4, 2025Aug 4, 2025

    • medspacy-unqlite

      Public
      Python bindings for the UnQLite embedded NoSQL database
      C
      •
      MIT License
      •34•0•0•0•Updated May 16, 2025May 16, 2025

    • medspacyV

      Public
      The medspacyV is a desktop application developed by the Mayo Clinic's Center for Clinical and Translational Science (CCaTS) Informatics Team. It offers a visual interface for the open-source medspacy library.
      Python
      •
      MIT License
      •0•4•0•0•Updated May 8, 2025May 8, 2025

    • medspacy_annotations

      Public
      Jupyter Notebook
      •1•3•5•1•Updated Jan 5, 2025Jan 5, 2025

    • PyRuSH

      Public
      init
      Jupyter Notebook
      •
      MIT License
      •10•4•2•0•Updated Oct 27, 2024Oct 27, 2024

    • QuickUMLS

      Public
      System for Medical Concept Extraction
      Python
      •
      MIT License
      •99•6•3•2•Updated Sep 12, 2024Sep 12, 2024

    • medspaCy_MedInfo_2023

      Public
      Supplementary information for the medspaCy workshop presentation at MedInfo 2023 in Sydney, Australia
      Jupyter Notebook
      •1•2•0•0•Updated Jul 16, 2023Jul 16, 2023

    • med_disposition_n2c2_2022

      Public
      Our solution for n2c2 2022 challenge task1 medication disposition
      0•0•0•0•Updated May 19, 2023May 19, 2023

    • simstring

      Public
      SimString
      C++
      •51•0•0•0•Updated Mar 3, 2023Mar 3, 2023

    • pysimstring

      Public
      Python Simstring bindings for Linux, OS X and Windows
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Oct 29, 2022Oct 29, 2022

    • medspacy_plyvel

      Public
      Plyvel, a fast and feature-rich Python interface to LevelDB
      Cython
      •
      Other
      •81•0•0•0•Updated Oct 26, 2022Oct 26, 2022

    • OHDSI_Tutorial

      Public
      Jupyter Notebook
      •2•5•0•0•Updated Mar 10, 2021Mar 10, 2021

    • quickumls_data_building

      Public
      Code for building QuickUMLS data resources from UMLS source data
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Dec 5, 2020Dec 5, 2020

    • sectionizer

      Public
      A rule-based Python module for spitting documents into sections.
      nlppipelinespacynlp-libraryclinical-nlpmedspacy
      Jupyter Notebook
      •
      MIT License
      •5•12•0•0•Updated Nov 14, 2020Nov 14, 2020

    • cycontext

      Public archive
      A Python implementation of the ConText algorithm for clinical text concept assertion using the spaCy framework
      nlppipelinenlp-libraryclinical-nlpspacymedspacy
      Jupyter Notebook
      •
      MIT License
      •0•5•1•0•Updated Nov 13, 2020Nov 13, 2020

    • spaCy

      Public
      💫 Industrial-strength Natural Language Processing (NLP) with Python and Cython
      Python
      •
      MIT License
      •4.6k•1•0•0•Updated Nov 1, 2020Nov 1, 2020

    • nlp_postprocessor

      Public
      A spaCy component for executing custom logic at the end of a pipeline.
      nlppipelinespacynlp-libraryclinical-nlpmedspacy
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 13, 2020Oct 13, 2020

    • nlp_preprocessor

      Public
      SpaCy component for modifying the string of a doc before tokenizing.
      nlppipelinenlp-libraryclinical-nlpmedspacyspacy
      Python
      •
      MIT License
      •1•1•0•0•Updated Oct 13, 2020Oct 13, 2020

    • cycontext_old

      Public archive
      A Python implementation of the ConText algorithm for clinical text concept assertion using the spaCy framework
      Jupyter Notebook
      •
      MIT License
      •4•1•0•0•Updated Sep 21, 2020Sep 21, 2020

    • target_matcher

      Public
      A wrapper class for extended rule-based matching in spaCy.
      Python
      •0•1•1•0•Updated Jun 19, 2020Jun 19, 2020

    • relation_extraction

      Public
      Spacy components for Adverse Drug Event (ADE) clinical text processing. This work comes from University of Utah work on the n2c2 2018 and MADE 1.0 ADE data challenges.
      MIT License
      •0•0•0•0•Updated Feb 4, 2020Feb 4, 2020

    • regex_matcher

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Jan 7, 2020Jan 7, 2020

    • spacy_tokenizer_infix

      Public
      Small repo to explore options to fix spacy's infix issue
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 31, 2019Dec 31, 2019