Repositories list

• ontologies_api

  Public
  Hypermedia API for NCBO's ontology-related projects

  Ruby

  •

  Other

  •28•26•34•6•Updated Mar 16, 2025Mar 16, 2025

• bioportal_web_ui

  Public
  A Rails application for biological ontologies

  open-sourcemetadatabioinformatics+ 9annotationrdfsemantic-webowlopen-scienceoboruby-on-rails+ 2

  JavaScript

  •

  Other

  •33•23•112•4•Updated Mar 12, 2025Mar 12, 2025

• ncbo_cron

  Public
  Jobs that run on a regular basis in the NCBO infrastructure

  Ruby

  •

  Other

  •19•3•26•4•Updated Mar 11, 2025Mar 11, 2025

• ncbo_ontology_recommender

  Public
  A ruby application that allows to obtain recommendations for the most relevant ontologies based on an excerpt from a biomedical text or a list of keywords

  Ruby

  •

  Other

  •7•5•4•2•Updated Mar 11, 2025Mar 11, 2025

• ncbo_annotator

  Public
  To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.

  Ruby

  •

  Other

  •14•19•15•2•Updated Mar 11, 2025Mar 11, 2025

• ontologies_linked_data

  Public
  Models and serializers for ontologies and related artifacts backed by 4store

  Ruby

  •

  Other

  •22•19•49•10•Updated Mar 11, 2025Mar 11, 2025

• goo

  Public
  Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.

  Ruby

  •

  Other

  •13•15•27•3•Updated Mar 7, 2025Mar 7, 2025

• ontologies_api_ruby_client

  Public
  A Ruby client for accessing NCBO's hypermedia api

  Ruby

  •

  Other

  •12•2•6•1•Updated Mar 6, 2025Mar 6, 2025

• 4store

  Public
  4store for BioPortal

  C

  •

  GNU General Public License v3.0

  •71•3•0•0•Updated Aug 15, 2024Aug 15, 2024

• biomixer

  Public
  BioMixer

  TypeScript

  •13•2•3•0•Updated Jun 20, 2024Jun 20, 2024

• sparql-client

  Public
  SPARQL client for Ruby.

  Ruby

  •

  The Unlicense

  •56•4•1•0•Updated May 6, 2024May 6, 2024

• owlapi_wrapper

  Public
  A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.

  Java

  •12•5•7•2•Updated Nov 4, 2023Nov 4, 2023

• cube

  Public
  Cube: A system for time series visualization.

  JavaScript

  •

  Other

  •416•0•0•0•Updated Jul 30, 2014Jul 30, 2014

• faraday-http-cache

  Public
  a faraday middleware that respects HTTP cache

  Ruby

  •

  Other

  •86•0•0•0•Updated Jul 16, 2013Jul 16, 2013