Repositories list

• CoralBlox.jl

  Public
  CoralBlox is a coral growth and mortality model that simulates distinct coral functional groups indirectly competing for a limited space over time. The model does not directly consider natural disturbances nor does it have representation of anthropogenic restoration and conservation activities such as coral seeding or cloud brightening.

  coralsreefecological-modelling

  Julia

  •

  MIT License

  •0•5•2•1•Updated Aug 6, 2025Aug 6, 2025

• gcrmn_model_dev

  Public
  code for the development of GCRMN models

  R

  •0•1•0•0•Updated Aug 6, 2025Aug 6, 2025

• reefguide

  Public
  Mono-repo for ReefGuide development

  TypeScript

  •0•2•39•2•Updated Aug 5, 2025Aug 5, 2025

• ADRIA.jl

  Public
  ADRIA: Adaptive Dynamic Reef Intervention Algorithms. A multi-criteria decision support platform for informing reef restoration and adaptation interventions.

  Julia

  •

  MIT License

  •7•22•60•18•Updated Aug 5, 2025Aug 5, 2025

• MixMustR_paper

  Public
  Code and data for MixMustR dxescrription paper

  R

  •

  MIT License

  •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

• bc_metareg

  Public
  Code and data for Fulton et al. 2025, 10.1111/gcb.70420

  R

  •

  Other

  •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

• ADRIAReefGuideWorker.jl

  Public
  ADRIA reef guide worker node. Completes ecological modelling jobs using ADRIA.jl.

  Julia

  •2•0•0•1•Updated Jul 31, 2025Jul 31, 2025

• cost-eco-model-linker

  Public
  Scripts for creating inputs for economics modelling from ecological and cost models.

  Python

  •0•1•5•1•Updated Jul 31, 2025Jul 31, 2025

• ReefGuideWorker.jl

  Public
  An instantiation of the ReefGuideWorkerTemplate.jl repo which implements the suitability and regional assessment jobs, utilising the ReefGuide.jl Julia package.

  Julia

  •2•0•0•1•Updated Jul 18, 2025Jul 18, 2025

• ReefGuide.jl

  Public
  ReefGuide Julia library functions. Supports regional and suitability assessment operations. Currently utilised by the ReefGuideWorker.jl job worker to asynchronously compute user tasks.

  Julia

  •

  MIT License

  •0•1•1•0•Updated Jul 18, 2025Jul 18, 2025

• ereefs-tutorials

  Public
  This repository contains the source scripts and rendered website files for the AIMS eReefs tutorials. The website is hosted via GitHub Pages.

  JavaScript

  •1•0•0•0•Updated Jul 16, 2025Jul 16, 2025

• ltmp_shiny_dashboard

  Public
  code behind shiny dashboard for LTMP

  R

  •0•1•0•0•Updated Jul 14, 2025Jul 14, 2025

• ReefGuideWorkerTemplate.jl

  Public
  A template to use for Julia based workers in the ReefGuide job system.

  Julia

  •2•0•0•0•Updated Jul 11, 2025Jul 11, 2025

• MADAME-api

  Public archive
  Julia API for the MADAME-app

  Julia

  •

  MIT License

  •0•1•0•0•Updated Jul 11, 2025Jul 11, 2025

• reefguide-web-api

  Public archive
  Holds a combination of application and infrastructure code for the ReefGuide's web API.

  TypeScript

  •

  MIT License

  •0•0•3•0•Updated Jul 11, 2025Jul 11, 2025

• MADAME-app

  Public archive
  Model Assessment and Decision Analysis for Marine Environments web application

  TypeScript

  •

  MIT License

  •0•3•6•0•Updated Jul 11, 2025Jul 11, 2025

• ReefGuideAPI.jl

  Public archive
  API for Reef Guidance and Assessment

  Julia

  •

  MIT License

  •0•2•10•0•Updated Jul 11, 2025Jul 11, 2025

• bayesnec

  Public
  Bayesian No-Effect-Concentration estimation in R

  toxicologybayesian-inferenceecotoxicology+ 4concentration-responseno-effect-concentrationthreshold-derivationnon-linear-decay

  R

  •

  Other

  •7•13•19•2•Updated Jul 10, 2025Jul 10, 2025

• reefscan_desktop_data_manager

  Public
  Python

  •0•0•3•0•Updated Jul 10, 2025Jul 10, 2025

• ereefs-netcdf-aggregator

  Public
  Performs temporal aggregation of the eReefs curved linear NetCDF files and optionally projects them to a regular grid.

  Java

  •

  MIT License

  •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• ereefs-visualisation-portal-static-website

  Public
  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• ReefBiodiversityAccountingModellingExamples

  Public
  Scripts and notebooks demonstrating examples of model runs and analyses for establishing a reef biodiversity accounting project.

  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jul 8, 2025Jul 8, 2025

• cost_model_queries

  Public
  Functions for sampling cost models and performing sensitivity analyses and regressions on cost model data.

  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•1•0•0•Updated Jul 4, 2025Jul 4, 2025

• GBR-reef-guidance-assessment

  Public
  Julia

  •0•4•1•1•Updated Jul 2, 2025Jul 2, 2025

• signal_or_noise

  Public
  R

  •0•0•0•0•Updated Jul 1, 2025Jul 1, 2025

• EcoRRAP3D

  Public
  3D Photogrammetry Scripts used by the EcoRRAP subprogram of RRAP (Reef Restoration and Adaptation Program)

  Python

  •0•1•0•0•Updated Jun 25, 2025Jun 25, 2025

• MixMustR

  Public
  MixMustR: a multi-tracer Bayesian approach to unravelling the sources of organic mixtures

  R

  •

  Other

  •0•1•2•0•Updated Jun 24, 2025Jun 24, 2025

• Julia_ML_training

  Public
  Training materials for the AIMS Julia Machine Learning workshop

  Jupyter Notebook

  •3•3•0•0•Updated Jun 24, 2025Jun 24, 2025

• ssddata

  Public
  Species Sensitivity Distribution Data

  datassdspecies-sensitivity-distribution

  R

  •1•2•2•0•Updated Jun 19, 2025Jun 19, 2025

• ltmp_dashboard

  Public
  repository in support of the LTMP dashboard

  R

  •0•1•0•0•Updated Jun 18, 2025Jun 18, 2025