Repositories list

• distributions

  Public
  Makefile

  •

  BSD 3-Clause "New" or "Revised" License

  •5•1•6•1•Updated Mar 9, 2025Mar 9, 2025

• library

  Public
  A website for sharing QIIME 2 Plugins

  Svelte

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•2•1•Updated Mar 9, 2025Mar 9, 2025

• q2view

  Public
  A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•3•3•Updated Mar 7, 2025Mar 7, 2025

• amplicon-docs

  Public
  Source for QIIME 2 amplicon documentation.

  Makefile

  •0•0•3•1•Updated Mar 7, 2025Mar 7, 2025

• library-plugins

  Public
  Stores a list of the repos that are included in the QIIME 2 library

  BSD 3-Clause "New" or "Revised" License

  •5•0•0•2•Updated Mar 6, 2025Mar 6, 2025

• q2-fmt

  Public
  q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •11•4•7•2•Updated Mar 4, 2025Mar 4, 2025

• q2-composition

  Public
  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •27•6•7•1•Updated Feb 27, 2025Feb 27, 2025

• q2-types

  Public
  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •42•17•25•3•Updated Feb 27, 2025Feb 27, 2025

• q2doc

  Public
  A MyST executable plugin for documenting QIIME 2 plugins.

  Python

  •

  Other

  •0•0•2•0•Updated Feb 26, 2025Feb 26, 2025

• q2-feature-classifier

  Public
  QIIME 2 plugin supporting taxonomic classification

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •38•19•8•1•Updated Feb 20, 2025Feb 20, 2025

• action-library-packaging

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5•0•0•1•Updated Feb 17, 2025Feb 17, 2025

• resources

  Public
  Source for QIIME 2 Resources page.

  TeX

  •

  BSD 3-Clause "New" or "Revised" License

  •4•1•1•0•Updated Feb 13, 2025Feb 13, 2025

• static-site-infrastructure

  Public
  Dockerfile

  •

  BSD 3-Clause "New" or "Revised" License

  •3•0•3•0•Updated Feb 13, 2025Feb 13, 2025

• q2-vsearch

  Public
  vsearch plugin for QIIME 2

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •22•6•8•0•Updated Feb 20, 2025Feb 20, 2025

• q2-dada2

  Public
  QIIME 2 plugin wrapping DADA2

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •37•20•10•1•Updated Feb 11, 2025Feb 11, 2025

• q2-cutadapt

  Public
  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •18•3•3•0•Updated Feb 10, 2025Feb 10, 2025

• q2-feature-table

  Public
  QIIME 2 plugin supporting operations on feature tables.

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •39•2•24•1•Updated Feb 7, 2025Feb 7, 2025

• q2-deblur

  Public
  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •22•2•7•1•Updated Feb 7, 2025Feb 7, 2025

• q2-quality-control

  Public
  A QIIME 2 plugin for quality control of sequence and feature data

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •17•4•8•0•Updated Feb 7, 2025Feb 7, 2025

• qiime2

  Public
  Official repository for the QIIME 2 framework.

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •241•495•68•6•Updated Feb 7, 2025Feb 7, 2025

• q2-quality-filter

  Public
  Quality filtering for QIIME2

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •16•1•3•0•Updated Jan 29, 2025Jan 29, 2025

• q2templates

  Public
  Design template package for QIIME 2 Plugins

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •15•4•0•0•Updated Jan 18, 2025Jan 18, 2025

• q2galaxy

  Public
  Generate Galaxy tool descriptions automatically from QIIME 2 actions.

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •17•19•10•0•Updated Jan 18, 2025Jan 18, 2025

• q2cli

  Public
  Command line interface for QIIME 2

  hacktoberfestq2interface

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •24•19•14•1•Updated Jan 18, 2025Jan 18, 2025

• q2-vizard

  Public
  The first choice of wizard lizards for interactive, generalized microbiome data visualization!

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •9•1•6•1•Updated Jan 18, 2025Jan 18, 2025

• q2-taxa

  Public
  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •29•3•43•0•Updated Jan 18, 2025Jan 18, 2025

• q2-stats

  Public
  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •8•1•2•1•Updated Jan 18, 2025Jan 18, 2025

• q2-sample-classifier

  Public
  QIIME 2 plugin for machine learning prediction of sample data.

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •36•6•15•0•Updated Jan 18, 2025Jan 18, 2025

• q2-phylogeny

  Public
  Phylogenetic reconstruction, and operations on phylogenetic trees.

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •19•4•2•0•Updated Jan 18, 2025Jan 18, 2025

• q2-mystery-stew

  Public
  This plugin exists to define integration tests between interfaces and the framework.

  hacktoberfest

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •6•0•0•0•Updated Jan 18, 2025Jan 18, 2025