Repositories list

• InterventionEvaluatR

  Public
  HTML

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  Other

  •3•6•14•0•Updated Jul 22, 2024Jul 22, 2024

• git-going

  Public
  Dockerfile

  •0•0•0•0•Updated Jul 17, 2024Jul 17, 2024

• rsv.rebound.normal.seasonality.global

  Public
  https://www.medrxiv.org/content/10.1101/2024.02.23.24303265v1.full

  R

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  MIT License

  •1•0•0•0•Updated Jun 6, 2024Jun 6, 2024

• rsv-transmission-model

  Public
  R

  •2•1•0•0•Updated Feb 14, 2024Feb 14, 2024

• New_Haven_Sewage

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  Analysis of coronavirus in Sewage in New Haven for Peccia et al

  HTML

  •0•0•0•0•Updated Jan 12, 2024Jan 12, 2024

• PCV-analysis

  Public
  This repository contains the code described in the paper: "Evaluating the Association between Routine Pneumococcal Vaccination and COVID-19 Severity among Older Adults in the United States "

  R

  •1•0•0•0•Updated Dec 27, 2023Dec 27, 2023

• Permeate

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  PERMutation basEd Analysis of mulTiple Endpoints

  R

  •2•0•0•0•Updated Dec 4, 2023Dec 4, 2023

• quant_meth_id

  Public
  Guest lecture for quantitative methods in infectious disease class

  R

  •1•2•0•0•Updated Nov 14, 2023Nov 14, 2023

• Paho_project_PCV_adult

  Public
  This repository contains the code to run the SC, ITS, and SC+ITS models

  R

  •1•0•0•0•Updated Aug 8, 2023Aug 8, 2023

• sero_switch_paper

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  Data and Code for Joshi et al paper identifying non-random patterns of serotype switching and exploring biological correlates of these patterns

  HTML

  •1•0•0•0•Updated Aug 4, 2023Aug 4, 2023

• Re-emergent-RSV-epidemics

  Public
  R

  •2•0•0•0•Updated May 18, 2023May 18, 2023

• sequential_bayesian_trials

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  HTML

  •2•0•0•0•Updated Mar 16, 2023Mar 16, 2023

• WISSPAR

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  Go

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  MIT License

  •0•0•0•0•Updated Mar 16, 2023Mar 16, 2023

• SPREAD

  Public
  RSV spread study in the Netherlands

  R

  •1•1•0•0•Updated Nov 10, 2022Nov 10, 2022

• weinbergerlab.github.io

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  Lab homepage

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  MIT License

  •0•0•0•4•Updated Oct 6, 2022Oct 6, 2022

• RSVhospitalizations_USA

  Public
  2•0•0•0•Updated Sep 12, 2022Sep 12, 2022

• Israel_pneumo_covid

  Public
  R

  •1•0•0•0•Updated Jun 9, 2022Jun 9, 2022

• SeroCall

  Public
  Pneumococcal serotype quantification using NGS reads

  Python

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  GNU General Public License v3.0

  •7•0•0•0•Updated Jun 6, 2022Jun 6, 2022

• carriage-simulation

  Public
  Design of an adult pneumococcal carriage study

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  Apache License 2.0

  •0•0•0•0•Updated May 31, 2022May 31, 2022

• Invasiveness_Navajo

  Public
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  •0•0•0•0•Updated Apr 26, 2022Apr 26, 2022

• HH_transmission_project_Covid19_Israel

  Public
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  •1•0•0•0•Updated Jan 28, 2022Jan 28, 2022

• WebUI-RStudio_cloud

  Public
  JavaScript

  •0•0•0•0•Updated Jan 3, 2022Jan 3, 2022

• south_africa_kleynhans

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  Analysis of mortality data from South Africa

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  •0•0•0•0•Updated Dec 10, 2021Dec 10, 2021

• join_SCOPE

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  Recruitment for SCOPE

  HTML

  •0•0•0•0•Updated Dec 1, 2021Dec 1, 2021

• helpful_r_code

  Public
  0•0•0•0•Updated Nov 15, 2021Nov 15, 2021

• RSVtiming

  Public
  This repository contains the code and data required to perform the analysis for the manuscript https://doi.org/10.1101/2021.09.22.21256632

  spatial-analysisepidemicstiming-analysis+ 1rsv

  R

  •2•0•0•0•Updated Sep 24, 2021Sep 24, 2021

• InterventionEvaluatR-WebUI

  Public
  JavaScript

  •0•0•0•0•Updated Sep 19, 2021Sep 19, 2021

• surveillance-class

  Public
  Materials for Public Health Surveillance class

  HTML

  •1•0•0•0•Updated Jul 28, 2021Jul 28, 2021

• RSV_spatiotemporal

  Public
  This is the code for RSV spatiotemporal modeling. The summarized statistics needed for the second stage are provided in the data file in the main branch. You can also find the detailed posterior samples from the first stage in the master branch.

  R

  •3•0•0•0•Updated Jun 9, 2021Jun 9, 2021

• ExcessILI

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  Other

  •2•1•7•0•Updated May 27, 2021May 27, 2021