diff --git a/docs/rst/commands/odgi_sort.rst b/docs/rst/commands/odgi_sort.rst index 274664a9..5f6c8a17 100644 --- a/docs/rst/commands/odgi_sort.rst +++ b/docs/rst/commands/odgi_sort.rst @@ -49,9 +49,8 @@ order: force-directed graph drawing algorithm minimizes the graph’s energy function or stress level. It applies stochastic gradient descent (SGD) to move a single pair of nodes at a time. The path index is - used to pick the terms to move stochastically. If ran with 1 thread - only, the resulting order of the graph is deterministic. The seed is - adjustable. + used to pick the terms to move stochastically. For more details about + the algorithm, please take a look at https://www.biorxiv.org/content/10.1101/2023.09.22.558964v2. Sorting the paths in a graph my refine the sorting process. For the users’ convenience, it is possible to specify a whole pipeline of sorts