setup.cfg

[bdist_wheel]
universal = 0

[tool:pytest]
# -s: do not capture stdout, conflicts with pysam.dispatch
# -v: verbose output
addopts = -s -v
testpaths = pysam tests

[flake8]
max-line-length = 100
max-complexity = 23
extend-ignore = E117, E124, E125, E201, E202, E211, E225, E231, E265, E266, E302, E303, E305, E402, E501, E701, E713, E722, E741, F403, F405, F811, F821, F841, W291, W293, W391, W605
per-file-ignores = __init__.py:F401

# E117 over-indented
# E124 closing bracket does not match visual indentation
# E125 continuation line with same indent as next logical line
# E201 whitespace after '{'
# E202 whitespace before '}'
# E211 whitespace before '('
# E225 missing whitespace around operator
# E231 missing whitespace after ':'
# E265 block comment should start with '# '
# E266 too many leading '#' for block comment
# E302 expected 2 blank lines, found 1
# E303 too many blank lines
# E305 expected 2 blank lines after class or function definition, found 1
# E402 module level import not at top of file
# E501 line too long
# E701 multiple statements on one line (colon)
# E713 test for membership should be 'not in'
# E722 do not use bare 'except'
# E741 ambiguous variable name '...'
# F403 'from ... import *' used; unable to detect undefined names
# F405 '...' may be undefined, or defined from star imports: ...
# F811 redefinition of unused '...' from line ...
# F821 undefined name '...'
# F841 local variable '...' is assigned to but never used
# W291 trailing whitespace
# W293 blank line contains whitespace
# W391 blank line at end of file
# W605 invalid escape sequence '...'