From 3fe61360a36be06bdba3bde343d050a8bf1f9d3f Mon Sep 17 00:00:00 2001
From: q2d2 <q2d2.noreply@gmail.com>
Date: Mon, 13 Jan 2025 21:51:10 +0000
Subject: [PATCH 1/2] Automated updates to seed environment: pathogenome

---
 2025.4/pathogenome/passed/seed-environment-conda.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/2025.4/pathogenome/passed/seed-environment-conda.yml b/2025.4/pathogenome/passed/seed-environment-conda.yml
index 32a9b3b3..c8959a1c 100644
--- a/2025.4/pathogenome/passed/seed-environment-conda.yml
+++ b/2025.4/pathogenome/passed/seed-environment-conda.yml
@@ -47,3 +47,4 @@ dependencies:
 extras:
   variant_override:
     qiime2_epoch: '2025.4'
+# modified: 2025-01-13

From 583d675ed596411ae2121e1f8bedcd12af8a8a07 Mon Sep 17 00:00:00 2001
From: q2d2 <q2d2.noreply@gmail.com>
Date: Tue, 14 Jan 2025 00:22:27 +0000
Subject: [PATCH 2/2] Update conda environments
 (Prepare-2025.4/pathogenome/2025-01-13)

---
 .../qiime2-pathogenome-macos-latest-conda.yml | 56 +++++++--------
 ...qiime2-pathogenome-ubuntu-latest-conda.yml | 72 +++++++++----------
 .../passed/seed-environment-conda.yml         | 33 +++++----
 .../staged/seed-environment-conda.yml         | 32 ++++-----
 4 files changed, 93 insertions(+), 100 deletions(-)

diff --git a/2025.4/pathogenome/passed/qiime2-pathogenome-macos-latest-conda.yml b/2025.4/pathogenome/passed/qiime2-pathogenome-macos-latest-conda.yml
index ff1fba08..d42eba1d 100644
--- a/2025.4/pathogenome/passed/qiime2-pathogenome-macos-latest-conda.yml
+++ b/2025.4/pathogenome/passed/qiime2-pathogenome-macos-latest-conda.yml
@@ -21,10 +21,11 @@ dependencies:
 - bedtools=2.31.1
 - bibtexparser=1.4.3
 - bioconductor-decontam=1.22.0
-- biom-format=2.1.15
+- biom-format=2.1.16
 - biopython=1.84
 - blast=2.16.0
 - bleach=6.2.0
+- bleach-with-css=6.2.0
 - bowtie2=2.5.1
 - brotli=1.1.0
 - brotli-bin=1.1.0
@@ -101,7 +102,6 @@ dependencies:
 - h5py=3.11.0
 - harfbuzz=9.0.0
 - hdf5=1.14.3
-- hdmedians=0.14.2
 - hmmer=3.4
 - hpack=4.0.0
 - htslib=1.21
@@ -110,7 +110,7 @@ dependencies:
 - idna=3.10
 - ijson=3.3.0
 - importlib-metadata=8.5.0
-- importlib_resources=6.4.5
+- importlib_resources=6.5.2
 - iniconfig=2.0.0
 - insilicoseq=2.0.1
 - iow=1.0.5
@@ -208,7 +208,6 @@ dependencies:
 - mpc=1.3.1
 - mpfr=4.2.1
 - mpi=1.0.1
-- multimethod=1.9.1
 - munkres=1.1.4
 - mypy_extensions=1.0.0
 - natsort=8.4.0
@@ -248,7 +247,7 @@ dependencies:
 - perl-common-sense=3.75
 - perl-compress-raw-bzip2=2.201
 - perl-compress-raw-zlib=2.202
-- perl-config-general=2.65
+- perl-config-general=2.67
 - perl-digest-perl-md5=1.9
 - perl-encode=3.21
 - perl-exporter=5.74
@@ -309,11 +308,11 @@ dependencies:
 - ptyprocess=0.7.0
 - pure_eval=0.2.3
 - pycparser=2.22
-- pydantic=2.10.4
+- pydantic=2.10.5
 - pydantic-core=2.27.2
 - pyfaidx=0.8.1.3
-- pygments=2.18.0
-- pyhmmer=0.10.15
+- pygments=2.19.1
+- pyhmmer=0.11.0
 - pyjwt=2.10.1
 - pynacl=1.5.0
 - pyobjc-core=10.3.2
@@ -332,21 +331,21 @@ dependencies:
 - pyvcf3=1.0.3
 - pyyaml=6.0.2
 - pyzmq=24.0.1
-- q2-alignment=2025.4.0.dev0+4.g06d67c6
+- q2-alignment=2025.4.0.dev0+5.g40a0361
 - q2-amrfinderplus=2025.4.0.dev0+15.g353f549
-- q2-assembly=2025.4.0.dev0+3.g1aa29f7
-- q2-demux=2025.4.0.dev0+4.g65f6480
-- q2-feature-classifier=2025.4.0.dev0+4.g723dff9
-- q2-feature-table=2025.4.0.dev0+6.gda8969c
-- q2-longitudinal=2025.4.0.dev0+4.g076c3e3
-- q2-metadata=2025.4.0.dev0+4.g089741e
-- q2-mystery-stew=2025.4.0.dev0+4.g61f2014
-- q2-quality-control=2025.4.0.dev0+5.g8b11caf
-- q2-sample-classifier=2025.4.0.dev0+4.gba6a7e8
-- q2-taxa=2025.4.0.dev0+4.g429b1f6
-- q2-types=2025.4.0.dev0+4.gcd4ef91
-- q2-viromics=2025.4.0.dev0+4.g776faa5
-- q2-vizard=2025.4.0.dev0+84.g33eb03a
+- q2-assembly=2025.4.0.dev0+5.gae9c336
+- q2-demux=2025.4.0.dev0+5.g0162ce9
+- q2-feature-classifier=2025.4.0.dev0+5.g2186a18
+- q2-feature-table=2025.4.0.dev0+7.g528f6e9
+- q2-longitudinal=2025.4.0.dev0+5.g23c62ea
+- q2-metadata=2025.4.0.dev0+5.g7af916f
+- q2-mystery-stew=2025.4.0.dev0+5.g51996ef
+- q2-quality-control=2025.4.0.dev0+6.gb759f55
+- q2-sample-classifier=2025.4.0.dev0+5.gbd5055c
+- q2-taxa=2025.4.0.dev0+5.g0de4357
+- q2-types=2025.4.0.dev0+6.g11e14d8
+- q2-viromics=2025.4.0.dev0+5.gf5ff1b3
+- q2-vizard=2025.4.0.dev0+85.g837033f
 - q2cli=2025.4.0.dev0+8.g63d82cb
 - q2templates=2025.4.0.dev0+5.gfcd2c55
 - qiime2=2025.4.0.dev0+11.g85975ad
@@ -375,14 +374,14 @@ dependencies:
 - r-munsell=0.5.1
 - r-nlme=3.1_165
 - r-optparse=1.7.5
-- r-pillar=1.10.0
+- r-pillar=1.10.1
 - r-pkgconfig=2.0.3
 - r-plyr=1.8.9
 - r-png=0.1_8
 - r-r6=2.5.1
 - r-rappdirs=0.3.3
 - r-rcolorbrewer=1.1_3
-- r-rcpp=1.0.13_1
+- r-rcpp=1.0.14
 - r-rcpptoml=0.2.2
 - r-reshape2=1.4.4
 - r-reticulate=1.36.0
@@ -406,21 +405,21 @@ dependencies:
 - rpds-py=0.22.3
 - rpsbproc=0.5.0
 - samtools=1.21
-- scikit-bio=0.6.0
+- scikit-bio=0.6.2
 - scikit-learn=1.4.2
 - scipy=1.13.0
 - seaborn=0.12.2
 - seaborn-base=0.12.2
 - send2trash=1.8.3
 - setproctitle=1.3.4
-- setuptools=75.6.0
+- setuptools=75.8.0
 - shortuuid=1.0.13
 - sigtool=0.1.3
 - simplejson=3.19.3
 - six=1.17.0
 - sniffio=1.3.1
 - soupsieve=2.5
-- spades=3.15.2
+- spades=4.0.0
 - stack_data=0.6.3
 - statsmodels=0.14.4
 - tapi=1100.0.11
@@ -443,7 +442,7 @@ dependencies:
 - typing_utils=0.1.0
 - tzdata=2024b
 - tzlocal=2.1
-- unicodedata2=15.1.0
+- unicodedata2=16.0.0
 - unifrac=1.3
 - unifrac-binaries=1.4
 - uri-template=1.3.0
@@ -456,7 +455,6 @@ dependencies:
 - wget=1.21.4
 - wheel=0.45.1
 - widgetsnbextension=4.0.13
-- wrapt=1.17.0
 - xmltodict=0.14.2
 - xorg-libxau=1.0.12
 - xorg-libxdmcp=1.1.5
diff --git a/2025.4/pathogenome/passed/qiime2-pathogenome-ubuntu-latest-conda.yml b/2025.4/pathogenome/passed/qiime2-pathogenome-ubuntu-latest-conda.yml
index ed8eb191..7f84d894 100644
--- a/2025.4/pathogenome/passed/qiime2-pathogenome-ubuntu-latest-conda.yml
+++ b/2025.4/pathogenome/passed/qiime2-pathogenome-ubuntu-latest-conda.yml
@@ -57,10 +57,11 @@ dependencies:
 - bioconductor-variantannotation=1.48.1
 - bioconductor-xvector=0.42.0
 - bioconductor-zlibbioc=1.48.0
-- biom-format=2.1.15
+- biom-format=2.1.16
 - biopython=1.84
 - blast=2.16.0
 - bleach=6.2.0
+- bleach-with-css=6.2.0
 - bowtie2=2.5.1
 - brotli=1.1.0
 - brotli-bin=1.1.0
@@ -134,7 +135,6 @@ dependencies:
 - h5py=3.11.0
 - harfbuzz=8.5.0
 - hdf5=1.14.3
-- hdmedians=0.14.2
 - hmmer=3.4
 - hpack=4.0.0
 - htslib=1.21
@@ -143,7 +143,7 @@ dependencies:
 - idna=3.10
 - ijson=3.3.0
 - importlib-metadata=8.5.0
-- importlib_resources=6.4.5
+- importlib_resources=6.5.2
 - iniconfig=2.0.0
 - insilicoseq=2.0.1
 - iow=1.0.5
@@ -238,7 +238,7 @@ dependencies:
 - libstdcxx=14.2.0
 - libstdcxx-devel_linux-64=14.2.0
 - libstdcxx-ng=14.2.0
-- libsystemd0=256.9
+- libsystemd0=257.2
 - libtiff=4.6.0
 - libunistring=0.9.10
 - libuuid=2.38.1
@@ -251,7 +251,6 @@ dependencies:
 - libxml2=2.12.7
 - libxslt=1.1.39
 - libzlib=1.2.13
-- llvm-openmp=8.0.1
 - lxml=5.2.2
 - lz4=4.3.3
 - lz4-c=1.10.0
@@ -267,7 +266,6 @@ dependencies:
 - mpfr=4.2.1
 - mpg123=1.32.9
 - mpi=1.0.1
-- multimethod=1.9.1
 - munkres=1.1.4
 - mypy_extensions=1.0.0
 - mysql-common=8.3.0
@@ -291,14 +289,13 @@ dependencies:
 - oniguruma=6.9.10
 - openjdk=22.0.1
 - openjpeg=2.5.2
-- openmp=8.0.1
 - openssl=3.4.0
 - overrides=7.7.0
 - packaging=24.2
 - pandas=2.2.2
 - pandera=0.22.1
 - pandera-base=0.22.1
-- pandoc=3.6.1
+- pandoc=3.6.2
 - pandocfilters=1.5.0
 - pango=1.54.0
 - paramiko=3.5.0
@@ -315,7 +312,7 @@ dependencies:
 - perl-common-sense=3.75
 - perl-compress-raw-bzip2=2.201
 - perl-compress-raw-zlib=2.202
-- perl-config-general=2.65
+- perl-config-general=2.67
 - perl-digest-perl-md5=1.9
 - perl-encode=3.21
 - perl-exporter=5.74
@@ -379,11 +376,11 @@ dependencies:
 - pulseaudio-client=17.0
 - pure_eval=0.2.3
 - pycparser=2.22
-- pydantic=2.10.4
+- pydantic=2.10.5
 - pydantic-core=2.27.2
 - pyfaidx=0.8.1.3
-- pygments=2.18.0
-- pyhmmer=0.10.15
+- pygments=2.19.1
+- pyhmmer=0.11.0
 - pyjwt=2.10.1
 - pynacl=1.5.0
 - pyparsing=3.2.1
@@ -402,21 +399,21 @@ dependencies:
 - pyvcf3=1.0.3
 - pyyaml=6.0.2
 - pyzmq=24.0.1
-- q2-alignment=2025.4.0.dev0+4.g06d67c6
+- q2-alignment=2025.4.0.dev0+5.g40a0361
 - q2-amrfinderplus=2025.4.0.dev0+15.g353f549
-- q2-assembly=2025.4.0.dev0+3.g1aa29f7
-- q2-demux=2025.4.0.dev0+4.g65f6480
-- q2-feature-classifier=2025.4.0.dev0+4.g723dff9
-- q2-feature-table=2025.4.0.dev0+6.gda8969c
-- q2-longitudinal=2025.4.0.dev0+4.g076c3e3
-- q2-metadata=2025.4.0.dev0+4.g089741e
-- q2-mystery-stew=2025.4.0.dev0+4.g61f2014
-- q2-quality-control=2025.4.0.dev0+5.g8b11caf
-- q2-sample-classifier=2025.4.0.dev0+4.gba6a7e8
-- q2-taxa=2025.4.0.dev0+4.g429b1f6
-- q2-types=2025.4.0.dev0+4.gcd4ef91
-- q2-viromics=2025.4.0.dev0+4.g776faa5
-- q2-vizard=2025.4.0.dev0+84.g33eb03a
+- q2-assembly=2025.4.0.dev0+5.gae9c336
+- q2-demux=2025.4.0.dev0+5.g0162ce9
+- q2-feature-classifier=2025.4.0.dev0+5.g2186a18
+- q2-feature-table=2025.4.0.dev0+7.g528f6e9
+- q2-longitudinal=2025.4.0.dev0+5.g23c62ea
+- q2-metadata=2025.4.0.dev0+5.g7af916f
+- q2-mystery-stew=2025.4.0.dev0+5.g51996ef
+- q2-quality-control=2025.4.0.dev0+6.gb759f55
+- q2-sample-classifier=2025.4.0.dev0+5.gbd5055c
+- q2-taxa=2025.4.0.dev0+5.g0de4357
+- q2-types=2025.4.0.dev0+6.g11e14d8
+- q2-viromics=2025.4.0.dev0+5.gf5ff1b3
+- q2-vizard=2025.4.0.dev0+85.g837033f
 - q2cli=2025.4.0.dev0+8.g63d82cb
 - q2templates=2025.4.0.dev0+5.gfcd2c55
 - qiime2=2025.4.0.dev0+11.g85975ad
@@ -457,7 +454,7 @@ dependencies:
 - r-dplyr=1.1.4
 - r-dtplyr=1.3.1
 - r-ellipsis=0.3.2
-- r-evaluate=1.0.1
+- r-evaluate=1.0.3
 - r-fansi=1.0.6
 - r-farver=2.1.2
 - r-fastmap=1.2.0
@@ -495,7 +492,7 @@ dependencies:
 - r-magrittr=2.0.3
 - r-mass=7.3_60.0.1
 - r-matrix=1.6_5
-- r-matrixstats=1.4.1
+- r-matrixstats=1.5.0
 - r-memoise=2.0.1
 - r-mgcv=1.9_1
 - r-mime=0.12
@@ -504,7 +501,7 @@ dependencies:
 - r-nlme=3.1_165
 - r-openssl=2.2.2
 - r-optparse=1.7.5
-- r-pillar=1.10.0
+- r-pillar=1.10.1
 - r-pkgbuild=1.4.5
 - r-pkgconfig=2.0.3
 - r-pkgload=1.4.0
@@ -513,7 +510,7 @@ dependencies:
 - r-png=0.1_8
 - r-praise=1.0.0
 - r-prettyunits=1.2.0
-- r-processx=3.8.4
+- r-processx=3.8.5
 - r-progress=1.2.3
 - r-ps=1.8.1
 - r-purrr=1.0.2
@@ -521,7 +518,7 @@ dependencies:
 - r-ragg=1.3.3
 - r-rappdirs=0.3.3
 - r-rcolorbrewer=1.1_3
-- r-rcpp=1.0.13_1
+- r-rcpp=1.0.14
 - r-rcpptoml=0.2.2
 - r-rcurl=1.98_1.16
 - r-readr=2.1.5
@@ -543,7 +540,7 @@ dependencies:
 - r-scales=1.3.0
 - r-selectr=0.4_2
 - r-snow=0.4_4
-- r-stringdist=0.9.14
+- r-stringdist=0.9.15
 - r-stringi=1.8.4
 - r-stringr=1.5.1
 - r-sys=3.4.3
@@ -564,7 +561,7 @@ dependencies:
 - r-vroom=1.6.5
 - r-waldo=0.6.1
 - r-withr=3.0.2
-- r-xfun=0.49
+- r-xfun=0.50
 - r-xml=3.99_0.17
 - r-xml2=1.3.6
 - r-yaml=2.3.10
@@ -581,7 +578,7 @@ dependencies:
 - rpsbproc=0.5.0
 - rsync=3.1.3
 - samtools=1.21
-- scikit-bio=0.6.0
+- scikit-bio=0.6.2
 - scikit-learn=1.4.2
 - scipy=1.13.0
 - seaborn=0.12.2
@@ -589,14 +586,14 @@ dependencies:
 - sed=4.8
 - send2trash=1.8.3
 - setproctitle=1.3.4
-- setuptools=75.6.0
+- setuptools=75.8.0
 - shortuuid=1.0.13
 - simplejson=3.19.3
 - sip=6.7.12
 - six=1.17.0
 - sniffio=1.3.1
 - soupsieve=2.5
-- spades=3.15.2
+- spades=4.0.0
 - stack_data=0.6.3
 - statsmodels=0.14.4
 - sysroot_linux-64=2.17
@@ -622,7 +619,7 @@ dependencies:
 - typing_utils=0.1.0
 - tzdata=2024b
 - tzlocal=2.1
-- unicodedata2=15.1.0
+- unicodedata2=16.0.0
 - unifrac=1.3
 - unifrac-binaries=1.4
 - uri-template=1.3.0
@@ -635,7 +632,6 @@ dependencies:
 - wget=1.21.4
 - wheel=0.45.1
 - widgetsnbextension=4.0.13
-- wrapt=1.17.0
 - xcb-util=0.4.0
 - xcb-util-image=0.4.0
 - xcb-util-keysyms=0.4.0
diff --git a/2025.4/pathogenome/passed/seed-environment-conda.yml b/2025.4/pathogenome/passed/seed-environment-conda.yml
index c8959a1c..b0c60f5d 100644
--- a/2025.4/pathogenome/passed/seed-environment-conda.yml
+++ b/2025.4/pathogenome/passed/seed-environment-conda.yml
@@ -3,7 +3,7 @@ channels:
 - conda-forge
 - bioconda
 dependencies:
-- biom-format=2.1.15
+- biom-format=2.1.16
 - bowtie2=2.5.1
 - h5py=3.11.0
 - hdf5=1.14.3
@@ -16,28 +16,28 @@ dependencies:
 - patsy=0.5.6
 - pysam=0.22.1
 - python=3.10
-- q2-alignment=2025.4.0.dev0+4.g06d67c6
+- q2-alignment=2025.4.0.dev0+5.g40a0361
 - q2-amrfinderplus=2025.4.0.dev0+15.g353f549
-- q2-assembly=2025.4.0.dev0+3.g1aa29f7
-- q2-demux=2025.4.0.dev0+4.g65f6480
-- q2-feature-classifier=2025.4.0.dev0+4.g723dff9
-- q2-feature-table=2025.4.0.dev0+6.gda8969c
-- q2-longitudinal=2025.4.0.dev0+4.g076c3e3
-- q2-metadata=2025.4.0.dev0+4.g089741e
-- q2-mystery-stew=2025.4.0.dev0+4.g61f2014
-- q2-quality-control=2025.4.0.dev0+5.g8b11caf
-- q2-sample-classifier=2025.4.0.dev0+4.gba6a7e8
-- q2-taxa=2025.4.0.dev0+4.g429b1f6
-- q2-types=2025.4.0.dev0+4.gcd4ef91
-- q2-viromics=2025.4.0.dev0+4.g776faa5
-- q2-vizard=2025.4.0.dev0+84.g33eb03a
+- q2-assembly=2025.4.0.dev0+5.gae9c336
+- q2-demux=2025.4.0.dev0+5.g0162ce9
+- q2-feature-classifier=2025.4.0.dev0+5.g2186a18
+- q2-feature-table=2025.4.0.dev0+7.g528f6e9
+- q2-longitudinal=2025.4.0.dev0+5.g23c62ea
+- q2-metadata=2025.4.0.dev0+5.g7af916f
+- q2-mystery-stew=2025.4.0.dev0+5.g51996ef
+- q2-quality-control=2025.4.0.dev0+6.gb759f55
+- q2-sample-classifier=2025.4.0.dev0+5.gbd5055c
+- q2-taxa=2025.4.0.dev0+5.g0de4357
+- q2-types=2025.4.0.dev0+6.g11e14d8
+- q2-viromics=2025.4.0.dev0+5.gf5ff1b3
+- q2-vizard=2025.4.0.dev0+85.g837033f
 - q2cli=2025.4.0.dev0+8.g63d82cb
 - q2templates=2025.4.0.dev0+5.gfcd2c55
 - qiime2=2025.4.0.dev0+11.g85975ad
 - r-base=4.3.3
 - r-reticulate=1.36.0
 - rescript=2025.4.0.dev0+7.g86836b5
-- scikit-bio=0.6.0
+- scikit-bio=0.6.2
 - scikit-learn=1.4.2
 - scipy=1.13.0
 - seaborn=0.12.2
@@ -47,4 +47,3 @@ dependencies:
 extras:
   variant_override:
     qiime2_epoch: '2025.4'
-# modified: 2025-01-13
diff --git a/2025.4/pathogenome/staged/seed-environment-conda.yml b/2025.4/pathogenome/staged/seed-environment-conda.yml
index c55d60ee..2eb3861c 100644
--- a/2025.4/pathogenome/staged/seed-environment-conda.yml
+++ b/2025.4/pathogenome/staged/seed-environment-conda.yml
@@ -3,7 +3,7 @@ channels:
 - conda-forge
 - bioconda
 dependencies:
-- biom-format=2.1.15
+- biom-format=2.1.16
 - bowtie2=2.5.1
 - h5py=3.11.0
 - hdf5=1.14.3
@@ -17,28 +17,28 @@ dependencies:
 - pysam=0.22.1
 - python=3.10
 - python_abi=3.9
-- q2-alignment=2025.4.0.dev0+4.g06d67c6
+- q2-alignment=2025.4.0.dev0+5.g40a0361
 - q2-amrfinderplus=2025.4.0.dev0+15.g353f549
-- q2-assembly=2025.4.0.dev0+3.g1aa29f7
-- q2-demux=2025.4.0.dev0+4.g65f6480
-- q2-feature-classifier=2025.4.0.dev0+4.g723dff9
-- q2-feature-table=2025.4.0.dev0+6.gda8969c
-- q2-longitudinal=2025.4.0.dev0+4.g076c3e3
-- q2-metadata=2025.4.0.dev0+4.g089741e
-- q2-mystery-stew=2025.4.0.dev0+4.g61f2014
-- q2-quality-control=2025.4.0.dev0+5.g8b11caf
-- q2-sample-classifier=2025.4.0.dev0+4.gba6a7e8
-- q2-taxa=2025.4.0.dev0+4.g429b1f6
-- q2-types=2025.4.0.dev0+4.gcd4ef91
-- q2-viromics=2025.4.0.dev0+4.g776faa5
-- q2-vizard=2025.4.0.dev0+84.g33eb03a
+- q2-assembly=2025.4.0.dev0+5.gae9c336
+- q2-demux=2025.4.0.dev0+5.g0162ce9
+- q2-feature-classifier=2025.4.0.dev0+5.g2186a18
+- q2-feature-table=2025.4.0.dev0+7.g528f6e9
+- q2-longitudinal=2025.4.0.dev0+5.g23c62ea
+- q2-metadata=2025.4.0.dev0+5.g7af916f
+- q2-mystery-stew=2025.4.0.dev0+5.g51996ef
+- q2-quality-control=2025.4.0.dev0+6.gb759f55
+- q2-sample-classifier=2025.4.0.dev0+5.gbd5055c
+- q2-taxa=2025.4.0.dev0+5.g0de4357
+- q2-types=2025.4.0.dev0+6.g11e14d8
+- q2-viromics=2025.4.0.dev0+5.gf5ff1b3
+- q2-vizard=2025.4.0.dev0+85.g837033f
 - q2cli=2025.4.0.dev0+8.g63d82cb
 - q2templates=2025.4.0.dev0+5.gfcd2c55
 - qiime2=2025.4.0.dev0+11.g85975ad
 - r-base=4.3.3
 - r-reticulate=1.36.0
 - rescript=2025.4.0.dev0+7.g86836b5
-- scikit-bio=0.6.0
+- scikit-bio=0.6.2
 - scikit-learn=1.4.2
 - scipy=1.13.0
 - seaborn=0.12.2