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Improvement Description
For the plugin, incorporate a strand argument to be fed to blast or vsearch that can limit whether the reverse complement is aligned against: 'strand': Str % Choices(['both', 'plus'])
This is invoked in the following lines
Improvement Description
For the plugin, incorporate a strand argument to be fed to
blast
orvsearch
that can limit whether the reverse complement is aligned against:'strand': Str % Choices(['both', 'plus'])
This is invoked in the following lines
https://github.com/qiime2/q2-feature-classifier/blob/35a518104a2f71fe2c72e0897345ccfe776dfadc/q2_feature_classifier/_vsearch.py#L131-L137
And I think makes reasonable sense to include as a functionality in this plugin.
Current Behavior
Only
both
strand search is enabled forvsearch
andblast
Proposed Behavior
Provide an additional parameter that allows searching the
plus
strand with these commands.Questions
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