usage_all.rst

Command line usage

Once the installation is successful, options for the corresponding usecase could be obtained by typing the corresponding command, or by adding -h flag to it:

• visualqc_alignment
• visualqc_freesurfer
• visualqc_func_mri
• visualqc_t1_mri

Each of them has a shorter name shortcut too to save a bit of typing :):

• vqcalign
• vqcfs
• vqcfunc
• vqct1

For example,

vqcalign
vqcfunc -h

Those options for each command are shown in their respective pages:

• :doc:`cli_alignment`
• :doc:`cli_freesurfer`
• :doc:`cli_func_mri`
• :doc:`cli_t1_mri`

Check the bottom of this page for examples.

Examples showing the usage of each of these use cases are shown below:

• :doc:`examples_freesurfer`
• :doc:`examples_func_mri`
• :doc:`examples_alignment`
• :doc:`examples_t1_mri`

Once the interface is up and running, check the :doc:`interface` page to learn various actions and shortcuts implemented.