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transformedDataModel.json
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transformedDataModel.json
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{
"demographics":{
"birthDate": {"type": "date", "values": [1920,1994], "weight": "uniform"},
"gender": {"type": "choice", "values": ["male","female"], "weight": "uniform"},
"race": {"type": "choice", "values": [{"code":"2106-3", "codeSystem":"http://hl7.org/fhir/v3/Race", "displayName": "White", "codeSystemName":"cdc"},
{"code":"2054-5", "codeSystem":"http://hl7.org/fhir/v3/Race", "displayName": "Black", "codeSystemName":"cdc"},
{"code":"2028-9", "codeSystem":"http://hl7.org/fhir/v3/Race", "displayName": "Asian", "codeSystemName":"cdc"},
{"code":"2131-1", "codeSystem":"http://hl7.org/fhir/v3/Race", "displayName": "Other", "codeSystemName":"cdc"},
{"code":"2076-8", "codeSystem":"http://hl7.org/fhir/v3/Race", "displayName": "Native Hawaiian or Other Pacific Islander", "codeSystemName":"cdc"}],
"weight": [0.5, 0.2, 0.05, 0.1, 0.14]}
},
"diseaseStatus": {
"disease": {"type": "choice", "values": [{"code":"420120006", "codeSystem":"http://snomed.info/sct", "displayName": "Gastrointestinal stromal tumor", "codeSystemName":"SNOMED"},
{"code":"408643008", "codeSystem":"http://snomed.info/sct", "displayName": "Invasive ductal carcinoma of breast", "codeSystemName":"SNOMED"}], "weight": "uniform", "names": ["http://snomed.info/sct/420120006","http://snomed.info/sct/408643008"]},
"diagnosisDate": {"type": "date", "values": [2002, 2016], "weight": "uniform"},
"isAlive": {"type": "choice", "values": [true, false], "weight": [0.8, 0.2]},
"survivalMonths": {"type": "range", "values": [3,80], "weight": "uniform"},
"tnm": { "type": "multi-choice", "values": [{"type": "choice", "values": [{"code":"67101007", "codeSystem":"http://snomed.info/sct", "displayName": "Tumor stage TX", "codeSystemName":"SNOMED"},
{"code":"58790005", "codeSystem":"http://snomed.info/sct", "displayName": "Tumor stage T0", "codeSystemName":"SNOMED"},
{"code":"23351008", "codeSystem":"http://snomed.info/sct", "displayName": "Tumor stage T1", "codeSystemName":"SNOMED"},
{"code":"67673008", "codeSystem":"http://snomed.info/sct", "displayName": "Tumor stage T2", "codeSystemName":"SNOMED"},
{"code":"14410001", "codeSystem":"http://snomed.info/sct", "displayName": "Tumor stage T3", "codeSystemName":"SNOMED"},
{"code":"65565005", "codeSystem":"http://snomed.info/sct", "displayName": "Tumor stage T4", "codeSystemName":"SNOMED"},
{"code":"369918000", "codeSystem":"http://snomed.info/sct", "displayName": "Tumor stage T1c", "codeSystemName":"SNOMED"}],
"weight": [0.05, 0.4, 0.1, 0.10, 0.15, 0.1, 0.1], "names": ["TX", "T0", "T1", "T2", "T3", "T4", "T1c"]},
{"type": "choice", "values": [{"code":"79420006", "codeSystem":"http://snomed.info/sct", "displayName": "NX stage", "codeSystemName":"SNOMED"},
{"code":"103802014", "codeSystem":"http://snomed.info/sct", "displayName": "N0 stage", "codeSystemName":"SNOMED"},
{"code":"53623008", "codeSystem":"http://snomed.info/sct", "displayName": "N1 stage", "codeSystemName":"SNOMED"},
{"code":"46059003", "codeSystem":"http://snomed.info/sct", "displayName": "N2 stage", "codeSystemName":"SNOMED"},
{"code": "5856006", "codeSystem":"http://snomed.info/sct", "displayName": "N3 stage", "codeSystemName":"SNOMED"}],
"weight": [0.05, 0.5, 0.2, 0.15, 0.1], "names": ["NX", "N0", "N1", "N2", "N3"]},
{"type": "choice", "values": [{"code":"27167007", "codeSystem":"http://snomed.info/sct", "displayName": "MX stage", "codeSystemName":"SNOMED"},
{"code":"51703010", "codeSystem":"http://snomed.info/sct", "displayName": "M0 stage", "codeSystemName":"SNOMED"},
{"code":"55440008", "codeSystem":"http://snomed.info/sct", "displayName": "M1 stage", "codeSystemName":"SNOMED"}],
"weight": [0.05, 0.85, 0.1], "names": ["MX", "M0", "M1"]}], "weight": [1,1,1], "names": ["t","n","m"]}
},
"treatments": {
"type":"multi-choice", "values": [{"code":"169413002", "codeSystem":"http://snomed.info/sct", "displayName": "hormonal therapy", "codeSystemName":"SNOMED"},
{"code":"385798007", "codeSystem":"http://snomed.info/sct", "displayName": "radiation therapy", "codeSystemName":"SNOMED"},
{"code":"736770009", "codeSystem":"http://snomed.info/sct", "displayName": "surgery", "codeSystemName":"SNOMED"},
{"code":"385786002", "codeSystem":"http://snomed.info/sct", "displayName": "chemotherapy", "codeSystemName":"SNOMED"},
{"code":"0000-0000", "codeSystem":"http://example.fhir.org", "displayName": "none (actively monitoring)", "codeSystemName": "temp"}], "weight": [0.2, 0.2, 0.5, 0.2, 0], "names": ["hormonal", "radiation", "surgery", "chemotherapy","noTreatment"]
},
"sideEffects": {
"type": "multi-choice", "values": [{"code":"439407002", "codeSystem":"http://snomed.info/sct", "displayName": "hot flash caused by medication", "codeSystemName":"SNOMED"},
{"code":"8357008", "codeSystem":"http://snomed.info/sct", "displayName": "reduced libido", "codeSystemName":"SNOMED"},
{"code":"84229001", "codeSystem":"http://snomed.info/sct", "displayName": "fatigue", "codeSystemName":"SNOMED"},
{"code":"73335002", "codeSystem":"http://snomed.info/sct", "displayName": "Nausea and vomiting", "codeSystemName":"SNOMED"},
{"code":"271737000", "codeSystem":"http://snomed.info/sct", "displayName": "anemia", "codeSystemName":"SNOMED"},
{"code":"235594008", "codeSystem":"http://snomed.info/sct", "displayName": "bowel dysfunction", "codeSystemName":"SNOMED"},
{"code":"267036007", "codeSystem":"http://snomed.info/sct", "displayName": "dyspnea", "codeSystemName":"SNOMED"},
{"code":"89362005", "codeSystem":"http://snomed.info/sct", "displayName": "weight loss", "codeSystemName":"SNOMED"},
{"code":"165232002", "codeSystem":"http://snomed.info/sct", "displayName": "urinary incontinence","codeSystemName":"SNOMED"}],
"weight": [0.1, 0.3, 0.5, 0.3, 0.07, 0.08, 0.3, 0.2, 0.1], "names": ["hotFlash","decLibido","fatigue","nauseaVomiting","anemia","bowelDys","dyspnea","weightLoss","urinaryDys"]
},
"tumorMarkers": {
"type": "multi-choice", "values": [
{"type": "choice", "values": [
{
"code":"16112-5",
"codeSystem":"http://fhir.loinc.org",
"displayName": "Estrogen Receptor",
"codeSystemName": "loinc",
"value": {"code":"C0205160", "codeSystem": "http://ncimeta.nci.nih.gov", "displayName": "Positive", "codeSystemName":"nci"}
},
{
"code":"16112-5",
"codeSystem":"http://fhir.loinc.org",
"displayName": "Estrogen Receptor",
"codeSystemName": "loinc",
"value": {"code":"C1446409", "codeSystem": "http://ncimeta.nci.nih.gov", "displayName": "Negative", "codeSystemName":"nci"}
}
], "weight": [0.8, 0.2], "names": ["Positive", "Negative"]
},
{"type": "choice", "values": [
{
"code":"16113-3",
"codeSystem":"http://fhir.loinc.org",
"displayName": "Progesterone Receptor",
"codeSystemName": "loinc",
"value": {"code":"C0205160", "codeSystem": "http://ncimeta.nci.nih.gov", "displayName": "Positive", "codeSystemName":"nci"}
},
{
"code":"16113-3",
"codeSystem":"http://fhir.loinc.org",
"displayName": "Progesterone Receptor",
"codeSystemName": "loinc",
"value": {"code":"C1446409", "codeSystem": "http://ncimeta.nci.nih.gov", "displayName": "Negative", "codeSystemName":"nci"}
}
], "weight": [0.67, 0.33], "names": ["Positive", "Negative"]},
{"type": "choice", "values": [
{
"code":"48676-1",
"codeSystem":"http://fhir.loinc.org",
"displayName": "HER2 Receptor",
"codeSystemName": "loinc",
"value": {"code":"C0205160", "codeSystem": "http://ncimeta.nci.nih.gov", "displayName": "Positive", "codeSystemName":"nci"}
},
{
"code":"48676-1",
"codeSystem":"http://fhir.loinc.org",
"displayName": "HER2 Receptor",
"codeSystemName": "loinc",
"value": {"code":"C1446409", "codeSystem": "http://ncimeta.nci.nih.gov", "displayName": "Negative", "codeSystemName":"nci"}
}
], "weight": [0.2, 0.8], "names": ["Positive", "Negative"]}
],
"weight": [0.95, 0.95, 0.9], "names": ["er", "pr", "her2"]
}
}