diff --git a/.github/workflows/self-hosted.yml b/.github/workflows/self-hosted.yml index f0332e3..44a66b5 100644 --- a/.github/workflows/self-hosted.yml +++ b/.github/workflows/self-hosted.yml @@ -239,4 +239,8 @@ jobs: run: | ./clusty-leiden-${{matrix.compiler}} --algo ${{matrix.algo}} --objects-file ./test/ictv.list --similarity --min ani 0.${{matrix.threshold}} ./test/ictv.num ictv.${{matrix.algo}}.${{matrix.threshold}}.reps.num --out-representatives --numeric-ids cmp ictv.${{matrix.algo}}.${{matrix.threshold}}.reps.num ./test/ictv.${{matrix.algo}}.${{matrix.threshold}}.reps.csv - + + - name: ${{matrix.algo}}, ${{matrix.threshold}} (non-default params) + run: | + ./clusty-leiden-${{matrix.compiler}} --algo ${{matrix.algo}} --objects-file ./test/ictv.list --similarity --min ani 0.${{matrix.threshold}} --leiden-resolution 1.0 --leiden-beta 0.03 --leiden-iterations 3 ./test/ictv.ani ictv.${{matrix.algo}}-params.${{matrix.threshold}}.reps.csv --out-representatives + cmp ictv.${{matrix.algo}}-params.${{matrix.threshold}}.reps.csv ./test/ictv.${{matrix.algo}}-params.${{matrix.threshold}}.reps.csv diff --git a/src/console.cpp b/src/console.cpp index a7b8eab..3dc03cf 100644 --- a/src/console.cpp +++ b/src/console.cpp @@ -166,13 +166,13 @@ void Console::doClustering( int n_clusters = 0; if (needDistances(params.algo)) { - auto clustering = createClusteringAlgo(params.algo); + auto clustering = createClusteringAlgo(params); IMatrix& mat = graph.getMatrix(); SparseMatrix& distances = static_cast&>(mat); n_clusters = (*clustering)(distances, objects, threshold, assignments); } else { - auto clustering = createClusteringAlgo(params.algo); + auto clustering = createClusteringAlgo(params); IMatrix& mat = graph.getMatrix(); SparseMatrix& distances = static_cast&>(mat); n_clusters = (*clustering)(distances, objects, threshold, assignments); diff --git a/src/console.h b/src/console.h index ca7f3df..b64caa7 100644 --- a/src/console.h +++ b/src/console.h @@ -53,11 +53,11 @@ class Console { } template - std::unique_ptr> createClusteringAlgo(Algo algo) { + std::unique_ptr> createClusteringAlgo(const Params& params) { std::unique_ptr> clustering; - switch (algo) + switch (params.algo) { case Algo::SingleLinkage: diff --git a/src/version.h b/src/version.h index 9700723..70c862e 100644 --- a/src/version.h +++ b/src/version.h @@ -8,12 +8,15 @@ // // ******************************************************************************************* -#define VERSION "1.1.0" -#define DATE "2024-09-30" +#define VERSION "1.1.1" +#define DATE "2024-10-05" /********* Version history ********* + 1.1.1 (2024-10-05) +Fixed bug with Leiden algorithm always running with default parameters. + 1.1.0 (2024-09-30) Memory optimizatons: * Row identifier removed from dist_t structure. diff --git a/test/ictv.leiden-params.70.reps.csv b/test/ictv.leiden-params.70.reps.csv new file mode 100644 index 0000000..051a3bc --- /dev/null +++ b/test/ictv.leiden-params.70.reps.csv @@ -0,0 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