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Add graph base matching#25

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sgibb wants to merge 33 commits intomainrformassspectrometry/MsCoreUtils:mainfrom joinGraphrformassspectrometry/MsCoreUtils:joinGraphCopy head branch name to clipboard

+475-22

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Commits on Oct 24, 2019

• feat: add .orderEdges

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  e78cf31

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• refactor: use .orderEdges for .joinOuter

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  9c05146

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• feat: add .edgeList

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• docs: fix join return value

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• docs: don't create man pages for internal functions

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• perf: create list instead of matrix

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• feat: add .anyCrossing

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• feat: add .edgeGroups

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• feat: add .combinations

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• feat: add .transposeList

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• tests: add joinGraph unit test

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• fix: remove useless na.rm argument

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• fix: correctly handle mutliple NA

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• refactor: use vectors as input for .anyCrossing

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• feat: add is{Precursor,Follower}Identical

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• feat: add .edgeGroupFrom

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• tests: add additional unit test for joinGraph

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Commits on Oct 25, 2019

• feat: throw an error for too many combinations

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• tests: fix joinGraph unit tests

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• feat: add joinGraph

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• docs: add author information

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• chore: move some joinGraph helper functions to utils.R

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  b516087

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• tests: fix .combinations error message

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• docs: run roxygenise

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• fix: import stats::setNames

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• docs: add function name to authors field

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Commits on Nov 18, 2019

• fix: .combinations generated list with wrong length

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• tests: add unit test for .edgeGroups bug

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• fix: .edgeGroup, not vectorized anymore

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Commits on Mar 5, 2020

• Merge branch 'master' into joinGraph

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Commits on Mar 6, 2020

• fix: treat equal indicies as crossing

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• fix: throw a warning if no valid match was found

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• refactor: remove validPeaksMatrix call

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