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CHANGELOG.md

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Changelog

Upcoming (0.0.14)

(0.0.13) (Latest)

refactoring

  • renamed orginal_path to original_path in File

new features:

  • added patch iterator

bug fixes:

  • install of 0.0.12 failed due to not finding requirements.txt. Requirements are now again specified in the setup.py.

0.0.12

breaking changes

  • specific code for external software has been moved to accessories
  • label weights in WeightedLabelSampler are now specified via a dictionary

refactoring

  • parsing of annotation files has been refactored and now includes a JSON schema
  • enhance shape and spacing error messages (Contributed by Jakub Kaczmarzyk)

new features:

  • accessories are loaded with package import
  • WholeSlideAnnotationParser based on JSON schema
  • JSON schema can be used to serialize annotations
  • albumentations callback (contributation by Thijs Gelton)
  • HedCallback augmentation
  • 'none' labels are sorted below other labels
  • associater classes StemSplitterAssociater and AnyOneAssociater
  • exact match option for associate_files
  • clip polygon and check for valid boxed in detection patch label sampler
  • MaskPatchLabelSampler now accepts a spacing
  • auxiliary method to create yaml from folders with data (contributation by Thijs Gelton)

bug fixes:

  • fix for randomness in uniform point sampler

setup file

  • version is read from version.py
  • requirements are now read from the requirements file (contribution by Thijs Gelton)
  • url now points to github repo (contribution by Jakub Kaczmarzyk)

0.0.11

new features:

  • image/annotations are now copied to separate folders
  • added source configuration
  • added one-hot-encoding preset
  • dataset and labels are now sorted such that the generator will produce the same output when the seed is set
  • minor refactoring

requirements:

  • increased NumPy version to make it compatible with ASAP2.0

0.0.10

bug fixes:

  • fixed sampling bugs

0.0.9

new features:

  • increase speed sampling

0.0.8

bug fixes:

  • fixed detection sampling bugs

0.0.7

new features:

  • detection support

  • pyvips image backend support

  • multiple spacings support

  • update call from producers to commander

  • fixed: copy data failed on first trial when using multiple cpus

0.0.6

  • No change log or this version

0.0.5

  • No change log or this version

0.0.4

  • No change log or this version

0.0.3

  • No change log or this version

0.0.2

  • No change log or this version

0.0.1

  • No change log or this version