DESCRIPTION

Type: Package
Package: phylotaR
Title: Automated Phylogenetic Sequence Cluster Identification from
    'GenBank'
Version: 1.3.0
Authors@R: c(
    person("Shixiang", "Wang", , "w_shixiang@163.com", role = c("aut", "cre")),
    person("Hannes", "Hettling", role = "aut"),
    person("Rutger", "Vos", role = "aut"),
    person("Alexander", "Zizka", role = "aut"),
    person("Dom", "Bennett", role = "aut"),
    person("Alexandre", "Antonelli", role = "aut")
  )
Description: A pipeline for the identification, within taxonomic groups,
    of orthologous sequence clusters from 'GenBank'
    <https://www.ncbi.nlm.nih.gov/genbank/> as the first step in a
    phylogenetic analysis. The pipeline depends on a local alignment
    search tool and is, therefore, not dependent on differences in gene
    naming conventions and naming errors.
License: MIT + file LICENSE
URL: https://docs.ropensci.org/phylotaR/,
    https://github.com/ropensci/phylotaR#readme
BugReports: https://github.com/ropensci/phylotaR/issues
Depends:
    methods,
    R (>= 3.5.0)
Imports:
    ape,
    bigmemory,
    ggplot2,
    igraph,
    plyr,
    R.utils,
    rentrez,
    restez (>= 2.1.0),
    RJSONIO,
    stringr,
    sys,
    treemapify,
    XML
Suggests:
    knitr,
    rmarkdown,
    testthat
VignetteBuilder: 
    knitr
Encoding: UTF-8
RoxygenNote: 7.2.3
SystemRequirements: BLAST+ (>=2.0)
X-schema.org-isPartOf: https://ropensci.org