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v2 wiki outline

Ryan Seamus McGee edited this page Apr 28, 2022 · 6 revisions

Stochastic Network Model Implementation

  • Compartment model
    • Abstracting a customizable compartment model
      • Compartments (States)
      • Transitions
      • Transmissibilities
      • Susceptibilities
      • ...
    • [Separate page?] Specifying custom compartment models
      • JSON
      • Compartment model builder
      • (pre-builts)
  • Contact networks
  • Individual heterogeneity (in params)
  • Stochastic dynamics
    • (Prime equation, then build up)
    • Transmission model
      • Global
      • Local (and mixedness)
        • Connectivity Correction Factor (loc?)
      • Exogenous (and openness)
      • Isolation ("active" in networks)
    • Gillespie implementation(s)

Interventions

  • Simulation loop (logic/structure of when/how interventions applied)
    • Simulation/intervention time
    • Introductions (eg timing)
    • Interventions (eg timing)
  • Compliances (loc)
  • Implementations of interventions
    • Isolation
      • (intro conditions for entering isolation (onset, testing, etc))
      • (recall how isolation works from model description)
      • (conditions for exiting isolation)
    • Testing
      • How a test works
        • Delays
        • Sensitivity (temporal)
        • ...
      • Onset
      • Proactive (random)
      • [Tracing]
      • Groupmates
      • De-isolation
      • (others?)
    • [Tracing]
    • Social distancing
    • Masking
    • Vaccines

COVID

  • Pre-built models
  • Pre-built scenarios

Networks

  • Generic (FARZ)
  • Community
  • Primary school
  • Secondary school