From 33744d591f128f26e8ed22a82b9648fadc9535b5 Mon Sep 17 00:00:00 2001
From: Saket Choudhary <saketkc@gmail.com>
Date: Wed, 21 Aug 2024 20:25:26 +0530
Subject: [PATCH] Black formatting

---
 Makefile                |  6 ++----
 pysradb/cli.py          |  1 +
 pysradb/filter_attrs.py |  6 +++---
 pysradb/search.py       |  1 +
 pysradb/sraweb.py       | 20 ++++++++++----------
 5 files changed, 17 insertions(+), 17 deletions(-)

diff --git a/Makefile b/Makefile
index b02dd996..e6e83d44 100644
--- a/Makefile
+++ b/Makefile
@@ -76,13 +76,11 @@ servedocs: docs ## compile the docs watching for changes
 	watchmedo shell-command -p '*.md|*.rst' -c '$(MAKE) -C docs html' -R -D .
 
 release: dist ## package and upload a release
-	python setup.py sdist
-	python setup.py bdist_wheel
+	python -m build
 	twine upload dist/*
 
 dist: clean ## builds source and wheel package
-	python setup.py sdist
-	python setup.py bdist_wheel
+	python -m build
 	ls -l dist
 
 install: clean ## install the package to the active Python's site-packages
diff --git a/pysradb/cli.py b/pysradb/cli.py
index a5f50530..281deb17 100644
--- a/pysradb/cli.py
+++ b/pysradb/cli.py
@@ -1,5 +1,6 @@
 """Command line interface for pysradb
 """
+
 import argparse
 import os
 import re
diff --git a/pysradb/filter_attrs.py b/pysradb/filter_attrs.py
index 477d3cf9..0acbd67f 100644
--- a/pysradb/filter_attrs.py
+++ b/pysradb/filter_attrs.py
@@ -108,9 +108,9 @@ def expand_sample_attribute_columns(metadata_df):
         if sample_attribute_keys:
             sample_attribute_keys = list(
                 map(
-                    lambda x: x
-                    if x not in metadata_df.columns.tolist()
-                    else x + "_expanded",
+                    lambda x: (
+                        x if x not in metadata_df.columns.tolist() else x + "_expanded"
+                    ),
                     sample_attribute_keys,
                 )
             )
diff --git a/pysradb/search.py b/pysradb/search.py
index 2240bde8..1b80a750 100644
--- a/pysradb/search.py
+++ b/pysradb/search.py
@@ -1,5 +1,6 @@
 """This file contains the search classes for the search feature.
 """
+
 import os
 import re
 import sys
diff --git a/pysradb/sraweb.py b/pysradb/sraweb.py
index a3ae141c..130214eb 100644
--- a/pysradb/sraweb.py
+++ b/pysradb/sraweb.py
@@ -71,15 +71,15 @@ def __init__(self, api_key=None):
                  API key for ncbi eutils.
         """
         self.base_url = dict()
-        self.base_url[
-            "esummary"
-        ] = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi"
-        self.base_url[
-            "esearch"
-        ] = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi"
-        self.base_url[
-            "efetch"
-        ] = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi"
+        self.base_url["esummary"] = (
+            "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi"
+        )
+        self.base_url["esearch"] = (
+            "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi"
+        )
+        self.base_url["efetch"] = (
+            "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi"
+        )
 
         self.ena_fastq_search_url = "https://www.ebi.ac.uk/ena/portal/api/filereport"
         self.ena_params = [("result", "read_run"), ("fields", "fastq_ftp")]
@@ -411,7 +411,7 @@ def sra_metadata(
         detailed=False,
         expand_sample_attributes=False,
         output_read_lengths=False,
-        **kwargs
+        **kwargs,
     ):
         esummary_result = self.get_esummary_response("sra", srp)
         try: