build(deps): bump the minor-and-patch group with 5 updates (#662)

Bumps the minor-and-patch group with 5 updates:

| Package | From | To |
| --- | --- | --- |
| [shapely](https://github.com/shapely/shapely) | `2.0.7` | `2.1.1` |
| [numpy](https://github.com/numpy/numpy) | `2.2.5` | `2.2.6` |
| [pluggy](https://github.com/pytest-dev/pluggy) | `1.5.0` | `1.6.0` |
| [rpds-py](https://github.com/crate-py/rpds) | `0.24.0` | `0.25.0` |
| [setuptools](https://github.com/pypa/setuptools) | `80.4.0` | `80.7.1` |


Updates `shapely` from 2.0.7 to 2.1.1
- [Release notes](https://github.com/shapely/shapely/releases)
- [Changelog](https://github.com/shapely/shapely/blob/main/CHANGES.txt)
- [Commits](shapely/shapely@2.0.7...2.1.1)

Updates `numpy` from 2.2.5 to 2.2.6
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.2.5...v2.2.6)

Updates `pluggy` from 1.5.0 to 1.6.0
- [Changelog](https://github.com/pytest-dev/pluggy/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pluggy@1.5.0...1.6.0)

Updates `rpds-py` from 0.24.0 to 0.25.0
- [Release notes](https://github.com/crate-py/rpds/releases)
- [Commits](crate-py/rpds@v0.24.0...v0.25.0)

Updates `setuptools` from 80.4.0 to 80.7.1
- [Release notes](https://github.com/pypa/setuptools/releases)
- [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst)
- [Commits](pypa/setuptools@v80.4.0...v80.7.1)

---
updated-dependencies:
- dependency-name: shapely
  dependency-version: 2.1.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: minor-and-patch
- dependency-name: numpy
  dependency-version: 2.2.6
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: minor-and-patch
- dependency-name: pluggy
  dependency-version: 1.6.0
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: minor-and-patch
- dependency-name: rpds-py
  dependency-version: 0.25.0
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: minor-and-patch
- dependency-name: setuptools
  dependency-version: 80.7.1
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: minor-and-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Author: dependabot[bot]