Error when running

[jarosado0911]

Hello 😊 ...
I am running ./pipeline_new.sh -i single_branch -o example4/ and single_branch is the attached file (I had to change the extension to .txt to attach to this message, it is .swc when I run the code). I git pulled ugcore, neuro_collection... and cmake... and make. I am also on fixmapping branch of neuro_collection. I am receiving the following messages when I execute:

LUA-ERROR! Call stack:
   1  @example4//geom.lua:43   error("Writing refinement # " .. ref .. " of 3d mesh to 1d mesh failed!")
LUA-ERROR:
example4//geom.lua:43: Writing refinement # 0 of 3d mesh to 1d mesh failed!
 % ABORTING script parsing.


mv: cannot stat '1dmesh_0.ugx': No such file or directory
mv: cannot stat '1dmesh_1.ugx': No such file or directory
mv: cannot stat '1dmesh_2.ugx': No such file or directory

and this message

LUA-ERROR! Call stack:
   1  buffer:1
LUA-ERROR:
[string "buffer"]:1: attempt to call (uninitialized or missspelled) global 'PostProcessMesh' (a nil value)
 % ABORTING script parsing.

mv: cannot stat 'test_new_tri.ugx': No such file or directory

and this message

% EXCEPTION on Proc 0: UGError thrown
 %   Error traceback (innermost first):
 %   0: Newton iteration did not converge for branching point projection at (4.93513, -13.6451, -13.4319). Defect is NaN.
 %      [at ...ugbase/lib_grid/refinement/projectors/neurite_projector.cpp:1256]
 %   1: Newton iteration for neurite projection at branching point failed in neurite 14.
 %      [at ...ugbase/lib_grid/refinement/projectors/neurite_projector.cpp:1551]
 % In CALL to method 'IRefiner:refine()'
 %    ARGS: ()
 % In FILE: @example2//geom.lua:35
 % At LINE: '   if not pcall(function() refiner:refine() end) then'
LUA-ERROR! Call stack:
   1  @example2//geom.lua:36   error("Global refinement #" .. 2-ref .. " failed!")
LUA-ERROR:
example2//geom.lua:36: Global refinement #2 failed!
 % ABORTING script parsing.

i also attached another cell because I get the same errors.
0-2a.CNG.txt
single_branch.txt