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newWorkflow.html
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<!DOCTYPE HTML>
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>LONI Pipeline Editor</title>
<script src="javascripts/jquery-1.6.4.min.js" type="text/javascript"></script>
<script src="javascripts/add_tabs.js" type="text/javascript"></script>
<script type="text/javascript" src='javascripts/raphael.js'></script>
<script src="javascripts/popups.js" type="text/javascript"></script>
<script type="text/javascript" src='javascripts/onLoad.js'></script>
<script type="text/javascript" src='javascripts/modules.js'></script>
<script type="text/javascript" src='javascripts/graffle.js'></script>
<script type="text/javascript" src='javascripts/path.js'></script>
<script type="text/javascript" src='javascripts/canvasDisplay.js'></script>
<script type="text/javascript" src='javascripts/graf.js'></script>
<script type="text/javascript" src='javascripts/rect.js'></script>
<script type="text/javascript" src='javascripts/data_sync.js'></script>
<script type="text/javascript" src="javascripts/parameters.js"></script>
<!-- Forms -->
<link href="stylesheets/forms.css" rel="stylesheet" type="text/css">
<link href="stylesheets/parameters.css" rel="stylesheet" type="text/css">
<link href="stylesheets/menu.css" rel="stylesheet" type="text/css">
<link href="stylesheets/master.css" rel="stylesheet" type="text/css">
<link href="stylesheets/tabs.css" rel="stylesheet" type="text/css">
</head>
<body>
<div id="tabs-menu">
<ul class="tabs">
<li class="tabSelected" canvas-id="canvas-1"><img src="images/icon-area.gif" class="button-close" />untitled</li>
<!-- other tabs may be added here -->
<li id="add_new_canvas"><img src="images/icon-area.gif" id="button-add" /></li>
</ul>
</div>
<div id="wrapper">
<div id="module-groupings">
<div id="module-title"><strong>Module Groupings:</strong> <span class="grouping-tab"> Untitled</span></div>
<div id="module-settings"><img src="images/settings.png" id="button-settings"/></div>
</div>
<div id="canvas-body">
<div class="canvae">
<div id="canvas-1" class="canvas"></div>
</div>
<!-- other canvases may be added here -->
</div>
<div id="play-buttons">
<img src="images/button-stop.gif" width="74" height="40">
<img src="images/button-play.gif" width="74" height="40">
</div>
</div>
<!-- Right click menus -->
<div id="main-menu" class="menuStyle">
<ul class="menu">
<li id="new" class="endBlock">New <font size="2">‣</font>
<ul>
<li id="option_module" class="endBlock">Module ...</li>
<li id="option_data_source">Data Source ...</li>
<li id="option_data_sink">Data Sink ...</li>
<li id="option_study"class="endBlock disabled">Study ...</li>
<li id="option_loop" class="disabled">Web Services...</li>
<li id="option_conditional" class="endBlock disabled" >Conditional ...</li>
<li id="option_viewer" class="endBlock disabled" >Viewer ...</li>
<li id="option_annotation" class="disabled">Annotation ...</li>
<li id="option_image" class="disabled">Image ...</li>
</ul>
</li>
<li class="cut">Cut</li>
<li class="copy">Copy</li>
<li class="copy_w_input disabled">Copy with Input</li>
<li class="paste">Paste</li>
<li class="select_all endBlock">Select All</li>
<li class="variables disabled">Variables</li>
<li class="workflow_property disabled">Workflow Properties</li>
</ul>
</div>
<div id="edit-menu" class="menuStyle">
<ul class="menu">
<li class="edit_module">Edit module …</li>
<li class"rotate disabled">Rotate ...</li>
<li class="delete endBlock">Delete</li>
<li class="cut">Cut</li>
<li class="copy">Copy</li>
<li class="copy_w_input disabled">Copy with Input</li>
<li class="paste">Paste</li>
<li class="select_all">Select All</li>
</ul>
</div>
<div id="ungroup-menu" class="menuStyle">
<ul class="menu">
<li class="edit_module">Edit module …</li>
<li id="ungroup_module">Ungroup …</li>
<li class"rotate disabled">Rotate ...</li>
<li class="delete endBlock">Delete</li>
<li class="cut">Cut</li>
<li class="copy">Copy</li>
<li class="copy_w_input disabled">Copy with Input</li>
<li class="paste">Paste</li>
<li class="select_all">Select All</li>
</ul>
</div>
<div id="group-menu" class="menuStyle">
<ul class="menu">
<li id="group_modules">Make a Group …</li>
<li class="rotate disabled">Rotate ...</li>
<li class="delete endBlock">Delete</li>
<li class="cut">Cut</li>
<li class="copy">Copy</li>
<li class="copy_w_input disabled">Copy with Input</li>
<li class="paste">Paste</li>
<li class="select_all">Select All</li>
</ul>
</div>
<!-- End of right click menu -->
<!-- Start of New Module -->
<div id="popup-module" style="display:none;" class="popUpObjectBox">
<div class="popup-controller-title">
<img src="images/close-popup-area.gif" width="14" height="12" class="close-popup" id="close-popup-module"> Module Definition </div>
<div class="popup-controller">
<ul class="tabs">
<li id="module-info-bt" >Info</li>
<li id="module-parameters-bt">Parameters</li>
<li id="module-execution-bt">Execution</li>
<li id="module-metadata-bt">Metadata</li>
</ul>
<div class="popup-content">
<!-- MODULE TAB CONTENT AREA -->
<!-- INFO CONTENT AREA -->
<div id="module-info" class="popup-tab">
<ul class="tabs" >
<li id="module-info-module-bt">Module</li>
<li id="module-info-provenence-bt">Provenance</li>
</ul>
<div class="popup-content">
<!--INFO TAB MODULE -->
<div id="module-info-module" class="popup-tab">
<table width="100%" border="0" cellspacing="0" cellpadding="0">
<tr>
<td colspan="2">Module creation date: Sun Oct 30 14:52:44 PDT 2011</td>
<td width="22%" colspan="2" rowspan="4"> </td>
</tr>
<tr>
<td colspan="2"><table width="100%" border="0" cellspacing="0" cellpadding="0">
<tr>
<td >Executable Authors: None Entered</td>
<td width="10"><input type="button" value=" ... " /></td>
</tr>
</table></td>
</tr>
<tr>
<td colspan="2"><table width="100%" border="0" cellspacing="0" cellpadding="0">
<tr>
<td>Module Described by: None Entered </td>
<td width="10"><input type="button" value=" ... " /></td>
</tr>
</table></td>
</tr>
<tr>
<td width="16%">Name:</td>
<td width="62%"><input name="module_name" id="module_name" class="module_input" type="text" value="" size="40" ></td>
</tr>
<tr>
<td>Package:</td>
<td colspan="3"><input name="module_package" id="module_package" class="module_input" type="text" value="" size="55"></td>
</tr>
<tr>
<td>Package Version:</td>
<td colspan="3"><input name="module_pkg_version" id="module_pkg_version" class="module_input" type="text" value="" size="10">
Executable Version:
<input name="module_exec_version" id="module_exec_version" class="module_input" type="text" value="" size="10"></td>
</tr>
<tr>
<td>Tags:</td>
<td colspan="3"><input name="module_tags" id="module_tags" class="module_input" type="text" value="" size="55"></td>
</tr>
<tr>
<td>Description:</td>
<td colspan="3"><textarea name="module_description" id="module_description" class="module_input" cols="40" type="text" value=""></textarea></td>
</tr>
</table>
</br>
</br>
<!-- WEBSITE-CITATION-LICENSE -->
<ul class="tabs">
<li id="mod-info-mod-website-bt">Website</li>
<li id="mod-info-mod-citations-bt">Citations</li>
<li id="mod-info-mod-license-bt">License</li>
</ul>
<div class="popup-content">
<div id="module-info-module-website" class="popup-tab">
<input name="Edit" type="button" value="Edit ...">
</div>
<div id="module-info-module-citations" class="popup-tab" style="display:none">
citations
</div>
<div id="module-info-module-license" class="popup-tab" style="display:none">
license
</div>
</div>
</div>
<!-- INFO TAB PROVENANCE -->
<div id="module-info-provenence" class="popup-tab" style="display:none">
provenence
<!-- to be added later -->
</div>
</div>
</div>
<!--METADATA CONTENT AREA -->
<div id="module-parameters" class="popup-tab" style="display:none">
<div id="parameters-list-box" class="list-box list-box-par">
<table width="100%" border="0" cellspacing="0" cellpadding="0" id="parameters-table">
<tr>
<th width="42%" align="left" valign="top">Parameter Name</th>
<th width="20%" align="left" valign="top">Type</th>
<th width="12%" align="left" valign="top">State</th>
<th width="14%" align="left" valign="top">Required</th>
<th width="12%" align="left" valign="top">Input</th>
</tr>
<!-- new parameters will be inserted here -->
</table>
</div> <!--end of parameters list box -->
<div id="parameters-controls">
<div id="cloneParameterButton"></div>
<div id="addParameterButton"></div>
<div id="removeParameterButton"></div>
<div style="clear:both"></div>
</div>
<div id="parameters-details" style="display:none">
<!-- ######## START PARAMETERS DETAILS ######## -->
<ul class="tabs">
<li id="mod-par-general-bt">General</li>
<li id="mod-par-dependencies-bt">Depend.</li>
<li id="mod-par-transformations-bt">Transf.</li>
<li id="mod-par-metadata-bt">Metadata</li>
</ul>
<div class="popup-content">
<!--START OF GENERAL TAB -->
<div id="mod-par-general" class="popup-tab popup-par-details-tab">
<div id="parameter-desc">
Description of the Parameter <br>
<textarea name="parameter-description" id="paramter-description" size="30" class="module_input"></textarea>
</div>
<div id="parameter-args">
Number of parameter arguments<br>
<input type="radio" name="par-args" id="parameter-arguments2" value="num-parameter-arguments" class="module_input">
<input name="num-args" type="number" id="num-args" value="1" min="0" size="8" class="module_input"/>
<input type="radio" name="par-args" id="parameter-arguments" value="unknown" class="module_input">Unknown
</div>
<div id="parameter-rem">
<div id="command-line">
<p>Command line prefix </p>
<input name="command-line-prefix" type="text" id="command-line-prefix" size="10">
<p><input type="checkbox" name="put-space" id="put-space">
Put space after prefix</p>
<input type="checkbox" name="put-prefix" id="put-prefix">
Prefix before each arg.
</div>
<div id="acceptable-files">
<fieldset>
<legend>Acceptable File Types</legend>
<p><input type="button" value="Edit file types..." ></p>
<div id="search-box"></div>
<div class="list-box">
<table width="62%" border="0" cellspacing="0" cellpadding="0">
<tr>
<th width="37%" align="left" valign="top">File Types</th>
<th width="30%" align="left" valign="top">Extensions</th>
<th width="33%" align="left" valign="top">Needs</th>
</tr>
<tr>
<td><input type="checkbox" name="warp" id="warp">
File</td>
<td> </td>
<td> </td>
</tr>
<tr>
<td><input type="checkbox" name="warp2" id="warp2">
0000.img</td>
<td>_0000.img</td>
<td> </td>
</tr>
<tr>
<td><input type="checkbox" name="warp4" id="warp4">
1D File</td>
<td>1D</td>
<td> </td>
</tr>
</table>
</div>
</fieldset>
</div>
<div style="clear:both"></div>
</div>
</div> <!-- END OF GENERAL TAB -->
<div id="mod-par-dependencies" class="popup-tab popup-par-details-tab">
dependencies!!!
</div> <!-- END OF DEPENDENCIES TAB -->
<div id="mod-par-transformations" class="popup-tab popup-par-details-tab">
transformations
</div> <!-- END OF TRANSFORMATIONS TAB -->
<div id="mod-par-metadata" class="popup-tab popup-par-details-tab">
metadata
</div> <!-- END OF METADATA TAB -->
</div> <!-- END OF POPUP CONTENT -->
</div> <!-- ###### END OF PARAMETERS DETAIL #########-->
</div><!--END OF PARAMETERS TAB -->
<!--EXECUTION CONTENT AREA -->
<div id="module-execution" class="popup-tab" style="display:none">
Execution
</div>
<!--METADATA CONTENT AREA -->
<div id="module-metadata" class="popup-tab" style="display:none">
Metadada
</div>
<!-- MODULE TAB CONTENT AREA -->
<input type="button" value="Help"/>
<input type="button" value="Cancel" class="cancelObjectButton"/>
<input type="button" value="Save" id="saveModuleButton" style="display:none" />
<input type="button" value="OK" class="createObjectButton" id="createModuleButton"/>
</div>
</div>
</div> <!--end of popup module -->
<!-- end of New Module -->
<!-- Start of new Data Sink -->
<!-- D A T A S I N K P O P U P -->
<div id="popup-data-sink" style="display:none;" class="popUpObjectBox">
<div class="popup-controller-title">
<img src="images/close-popup-area.gif" width="14" height="12" class="close-popup" id="close-popup-data-sink"> Data Sink </div>
<div class="popup-controller">
<ul class="tabs" >
<li id="data-sink-info-bt">Info</li>
<li id="data-sink-outputs-bt">Outputs</li>
</ul>
<div class="popup-content">
<!-- DATA SINK TAB CONTENT AREA -->
<!-- INFO CONTENT AREA -->
<div id="data-sink-info" class="popup-tab">
<form id="data-sink-form">
<table width="100%" border="0" cellspacing="0" cellpadding="0">
<tr>
<td colspan="2">Module creation date: Sun Oct 30 14:52:44 PDT 2011</td>
<td width="22%" colspan="2" rowspan="4"> </td>
</tr>
<tr>
<td colspan="2"><table width="100%" border="0" cellspacing="0" cellpadding="0">
<tr>
<td >Executable Authors: None Entered</td>
<td width="10"><input type="button" value=" ... " /></td>
</tr>
</table></td>
</tr>
<tr>
<td colspan="2"><table width="100%" border="0" cellspacing="0" cellpadding="0">
<tr>
<td>Module Described by: None Entered </td>
<td width="10"><input type="button" value=" ... " /></td>
</tr>
</table></td>
</tr>
<tr>
<td width="16%">Name:</td>
<td width="62%"><input name="data-sink_name" class="data_sink_input" type="text" value="" id="data-sink_name" size="40" ></td>
</tr>
<tr>
<td>Package:</td>
<td colspan="3"><input name="data-sink_package" class="data_sink_input" type="text" id="data-sink_package" value="" size="55"></td>
</tr>
<tr>
<td>Package Version:</td>
<td colspan="3"><input name="data-sink_pkg_version" class="data_sink_input" type="text" value="" id="data-sink_pkg_version" size="10"></td>
</tr>
<tr>
<td>Tags:</td>
<td colspan="3"><input name="data_sink_tags" class="data_sink_input" type="text" value="" id="data_sink_tags" size="55"></td>
</tr>
<tr>
<td>Description:</td>
<td colspan="3"><textarea name="data_sink_description" class="data_sink_input" cols="40" id="data_sink_description" type="text" value=""></textarea></td>
</tr>
</table>
</form>
</br>
</br>
</div>
<!--OUTPUTS CONTENT AREA -->
<div id="data-sink-outputs" class="popup-tab" style="display:none">
outputs
</div>
<!-- DATA SINK END TAB CONTENT AREA -->
<input type="button" value="Help"/>
<input type="button" value="Cancel" class="cancelObjectButton"/>
<input type="button" value="OK" class="createObjectButton" id="createDataSinkButton"/>
<input type="button" value="Save" id="saveDataSinkButton" style="display:none"/>
</div>
</div>
</div> <!--end of data sink -->
<!-- End Of data Sink -->
<!-- D A T A S O U R C E P O P U P -->
<div id="popup-data-source" style="display:none;" class="popUpObjectBox">
<div class="popup-controller-title">
<img src="images/close-popup-area.gif" width="14" height="12" class="close-popup" id="close-popup-data-source"> Data Source </div>
<div class="popup-controller">
<ul class="tabs" >
<li id="data-source-info-bt">Info</li>
<li id="data-source-inputs-bt">Inputs</li>
</ul>
<div class="popup-content">
<!-- DATA SOURCE TAB CONTENT AREA -->
<!-- INFO CONTENT AREA -->
<div id="data-source-info" class="popup-tab">
<table width="100%" border="0" cellspacing="0" cellpadding="0">
<tr>
<td colspan="2">Module creation date: Sun Oct 30 14:52:44 PDT 2011</td>
<td width="22%" colspan="2" rowspan="4"> </td>
</tr>
<tr>
<td colspan="2"><table width="100%" border="0" cellspacing="0" cellpadding="0">
<tr>
<td >Executable Authors: None Entered</td>
<td width="10"><input type="button" value=" ... " /></td>
</tr>
</table></td>
</tr>
<tr>
<td colspan="2"><table width="100%" border="0" cellspacing="0" cellpadding="0">
<tr>
<td>Module Described by: None Entered </td>
<td width="10"><input type="button" value=" ... " /></td>
</tr>
</table></td>
</tr>
<tr>
<td width="16%">Name:</td>
<td width="62%"><input name="data-source_name" id="data-source_name" class="data_source_input" type="text" value="" size="40" ></td>
</tr>
<tr>
<td>Package:</td>
<td colspan="3"><input name="data-source_package" id="data-source_package" class="data_source_input" type="text" value="" size="55"></td>
</tr>
<tr>
<td>Package Version:</td>
<td colspan="3"><input name="data-source_pkg_version" id="data-source_pkg_version" class="data_source_input" type="text" value="" size="10"></td>
</tr>
<tr>
<td>Tags:</td>
<td colspan="3"><input name="data_source_tags" id="data_source_tags" class="data_source_input" type="text" value="" size="55"></td>
</tr>
<tr>
<td>Description:</td>
<td colspan="3"><textarea name="data_source_description" id="data_source_description" class="data_source_input" cols="40" type="text" value=""></textarea></td>
</tr>
</table>
</br>
</br>
</div>
<!--INPUTS CONTENT AREA -->
<div id="data-source-inputs" class="popup-tab" style="display:none">
Inputs
</div>
<!-- DATA SOURCE END TAB CONTENT AREA -->
<input type="button" value="Help"/>
<input type="button" value="Cancel" class="cancelObjectButton"/>
<input type="button" value="OK" class="createObjectButton" id="createDataSourceButton"/>
<input type="button" value="Save" id="saveDataSourceButton" style="display:none"/>
</div>
</div>
</div> <!--end of data source module -->
</body>
</html>