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As part of #230, we append the MD stats header when writing in all cases: https://github.com/stfc/janus-core/blob/main/janus_core/calculations/md.py#L849
This means running the same calculation e.g.
janus md --ensemble nvt --struct tests/data/NaCl.cif --steps 2 --stats-every 1 --traj-every 1 janus md --ensemble nvt --struct tests/data/NaCl.cif --steps 2 --stats-every 1 --traj-every 1
creates two sets of headers in the same file:
# Step | Real_Time [s] | Time [fs] | Epot/N [eV] | EKin/N [eV] | T [K] | ETot/N [eV] | Density [g/cm^3] | Volume [Ang^3] | P [GPa] | Pxx [GPa] | Pyy [GPa] | Pzz [GPa] | Pyz [GPa] | Pxz [GPa] | Pxy [GPa] | Target_T [K] 0 0.252 0.00 -3.37939097e+00 4.25131948e-02 328.897 -3.33687778e+00 2.164 1.79406144e+02 9.68851553e-01 9.32855803e-01 1.03079033e+00 9.42908522e-01 -3.80292164e-02 -2.35372733e-02 1.10649754e-01 300.00000 1 0.229 1.00 -3.37935448e+00 4.13830343e-02 320.154 -3.33797145e+00 2.164 1.79406144e+02 9.64304008e-01 9.26742310e-01 1.02031498e+00 9.45854731e-01 -1.74348173e-02 -1.07082055e-02 9.71744091e-02 300.00000 2 0.072 2.00 -3.37924838e+00 3.80714726e-02 294.534 -3.34117691e+00 2.164 1.79406144e+02 9.50926794e-01 9.10987322e-01 1.02354153e+00 9.18251529e-01 -2.87410219e-02 -4.01354358e-03 8.88494687e-02 300.00000 # Step | Real_Time [s] | Time [fs] | Epot/N [eV] | EKin/N [eV] | T [K] | ETot/N [eV] | Density [g/cm^3] | Volume [Ang^3] | P [GPa] | Pxx [GPa] | Pyy [GPa] | Pzz [GPa] | Pyz [GPa] | Pxz [GPa] | Pxy [GPa] | Target_T [K] 0 0.273 0.00 -3.37939097e+00 3.28890051e-02 254.441 -3.34650197e+00 2.164 1.79406144e+02 9.23012464e-01 1.02846213e+00 8.62384128e-01 8.78191129e-01 5.81712201e-02 -2.37951393e-02 1.51360932e-02 300.00000 1 0.220 1.00 -3.37935900e+00 3.17246846e-02 245.433 -3.34763432e+00 2.164 1.79406144e+02 9.18364561e-01 1.02950056e+00 8.65033703e-01 8.60559418e-01 5.34354353e-02 -2.80580164e-02 1.27991633e-02 300.00000 2 0.069 2.00 -3.37926359e+00 3.08789967e-02 238.891 -3.34838459e+00 2.164 1.79406144e+02 9.17023822e-01 1.03640370e+00 8.72749112e-01 8.41918661e-01 4.24732115e-02 -2.35075712e-02 2.43917085e-02 300.00000
I think, if we're writing the header (which may not be the case for restarting, etc.), we usually want to overwrite the file, as we used to?
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As part of #230, we append the MD stats header when writing in all cases: https://github.com/stfc/janus-core/blob/main/janus_core/calculations/md.py#L849
This means running the same calculation e.g.
creates two sets of headers in the same file:
I think, if we're writing the header (which may not be the case for restarting, etc.), we usually want to overwrite the file, as we used to?
The text was updated successfully, but these errors were encountered: