From 39df167f60b45c3d51f4335e1170940a4daa8fed Mon Sep 17 00:00:00 2001 From: timoast <4591688+timoast@users.noreply.github.com> Date: Fri, 17 Jan 2025 18:04:10 +0800 Subject: [PATCH] set dependencies=TRUE --- .github/workflows/cmd-check.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/cmd-check.yml b/.github/workflows/cmd-check.yml index 2cf2ac0..1af806c 100644 --- a/.github/workflows/cmd-check.yml +++ b/.github/workflows/cmd-check.yml @@ -161,7 +161,7 @@ jobs: ## Pass #1 at installing dependencies message(paste('****', Sys.time(), 'pass number 1 at installing dependencies: local dependencies ****')) - remotes::install_local(repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = TRUE) + remotes::install_local(repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = TRUE, dependencies = TRUE) continue-on-error: true shell: Rscript {0} @@ -169,7 +169,7 @@ jobs: run: | ## Pass #2 at installing dependencies message(paste('****', Sys.time(), 'pass number 2 at installing dependencies: any remaining dependencies ****')) - remotes::install_local(repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = TRUE) + remotes::install_local(repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = TRUE, dependencies = TRUE) ## For running the checks message(paste('****', Sys.time(), 'installing rcmdcheck and BiocCheck ****'))