perform an initial filtering of low count cells

[sylestiel]

Hi @timoast,

perform an initial filtering of low count cells

md.500 <- md.500[md.500$passed_filters > 500, ]

$passed_filters is not present in the 10XMultiome output from Cell Ranger.

What alternative can I use.

Thanks!

[timoast]

The goal is to filter out cells with low counts, you can use anything in the metadata that quantifies the total counts per cell.