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FindMotifs return pvalue with NaN #1905

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nh-codem opened this issue Mar 5, 2025 · 0 comments
Open

FindMotifs return pvalue with NaN #1905

nh-codem opened this issue Mar 5, 2025 · 0 comments
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@nh-codem
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nh-codem commented Mar 5, 2025

Why are all the results returned as NaN when running FindMotifs in Signac?

pfm <- getMatrixSet(
    x = JASPAR2020,
    opts = list(collection = "CORE", tax_group = 'vertebrates', all_versions = FALSE)
)
tmptObj <- AddMotifs(object = tmptObj, genome = BSgenome.Mfascicularis.NCBI.5.0,pfm = pfm)
enriched.motifs <- FindMotifs(object = tmptObj, features = daPeaks)

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@nh-codem nh-codem added the bug Something isn't working label Mar 5, 2025
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