libics_data.c

/*
 * libics: Image Cytometry Standard file reading and writing.
 *
 * Copyright 2015-2019:
 *   Scientific Volume Imaging Holding B.V.
 *   Hilversum, The Netherlands.
 *   https://www.svi.nl
 *
 * Contact: libics@svi.nl
 *
 * Copyright (C) 2000-2013 Cris Luengo and others
 *
 * Large chunks of this library written by
 *    Bert Gijsbers
 *    Dr. Hans T.M. van der Voort
 * And also Damir Sudar, Geert van Kempen, Jan Jitze Krol,
 * Chiel Baarslag and Fons Laan.
 *
 * This library is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Library General Public
 * License as published by the Free Software Foundation; either
 * version 2 of the License, or (at your option) any later version.
 *
 * This library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 * Library General Public License for more details.
 *
 * You should have received a copy of the GNU Library General Public
 * License along with this library; if not, write to the Free
 * Software Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
 */

/*
 * FILE : libics_data.c
 *
 * This file declares some data structures used when reading and
 * writing the ICS headers.
 */


#include "libics_intern.h"


Ics_Symbol G_CatSymbols[] =
{
    { "source",           ICSTOK_SOURCE},
    { "layout",           ICSTOK_LAYOUT},
    { "representation",   ICSTOK_REPRES},
    { "parameter",        ICSTOK_PARAM},
    { ICS_HISTORY,        ICSTOK_HISTORY}, /* Don't want duplicate strings... */
    { "sensor",           ICSTOK_SENSOR},
    { "end",              ICSTOK_END }
};


Ics_Symbol G_SubCatSymbols[] =
{
    {"file",               ICSTOK_FILE},
    {"offset",             ICSTOK_OFFSET},
    {"parameters",         ICSTOK_PARAMS},
    {"order",              ICSTOK_ORDER},
    {"sizes",              ICSTOK_SIZES},
    {"coordinates",        ICSTOK_COORD},
    {"significant_bits",   ICSTOK_SIGBIT},
    {"format",             ICSTOK_FORMAT},
    {"sign",               ICSTOK_SIGN},
    {"compression",        ICSTOK_COMPR},
    {"byte_order",         ICSTOK_BYTEO},
    {"origin",             ICSTOK_ORIGIN},
    {"scale",              ICSTOK_SCALE},
    {"units",              ICSTOK_UNITS},
    {"labels",             ICSTOK_LABELS},
    {"SCIL_TYPE",          ICSTOK_SCILT},
    {"type",               ICSTOK_TYPE},
    {"model",              ICSTOK_MODEL},
    {"s_params",           ICSTOK_SPARAMS},
    {"s_states",           ICSTOK_SSTATES}
};


Ics_Symbol G_SubSubCatSymbols[] =
{
    {"Channels",            ICSTOK_CHANS},
    {"Detectors",           ICSTOK_DETECTORS},
    {"ImagingDirection",    ICSTOK_IMDIR},
    {"NumAperture",         ICSTOK_NUMAPER},
    {"ObjectiveQuality",    ICSTOK_OBJQ},
    {"RefrInxMedium",       ICSTOK_REFRIME},
    {"RefrInxLensMedium",   ICSTOK_REFRILM},
    {"PinholeRadius",       ICSTOK_PINHRAD},
    {"IllPinholeRadius",    ICSTOK_ILLPINHRAD},
    {"PinholeSpacing",      ICSTOK_PINHSPA},
    {"ExcitationBeamFill",  ICSTOK_EXBFILL},
    {"LambdaEx",            ICSTOK_LAMBDEX},
    {"LambdaEm",            ICSTOK_LAMBDEM},
    {"ExPhotonCnt",         ICSTOK_PHOTCNT},
    {"InterFacePrimary",    ICSTOK_IFACE1},
    {"InterFaceSecondary",  ICSTOK_IFACE2},
    {"Description",         ICSTOK_DESCRIPTION},
    {"DetectorMagnif",      ICSTOK_DETMAG},
    {"DetectorPPU",         ICSTOK_DETPPU},
    {"DetectorBaseline",    ICSTOK_DETBASELINE},
    {"DetectorLineAvgCnt",  ICSTOK_DETLNAVGCNT},
    {"DetectorNoiseGain",   ICSTOK_DETNOISEGAIN},
    {"DetectorOffset",      ICSTOK_DETOFFSET},
    {"DetectorSensitivity", ICSTOK_DETSENS},
    {"DetectorRadius",      ICSTOK_DETRADIUS},
    {"DetectorScale",       ICSTOK_DETSCALE},
    {"DetectorStretch",     ICSTOK_DETSTRETCH},
    {"DetectorRot",         ICSTOK_DETROT},
    {"DetectorMirror",      ICSTOK_DETMIRROR},
    {"DetectorModel",       ICSTOK_DETMODEL},
    {"DetectorReduceHist",  ICSTOK_DETREDUCEHIST},
    {"STEDDeplMode",        ICSTOK_STEDDEPLMODE},
    {"STEDLambda",          ICSTOK_STEDLAMBDA},
    {"STEDSatFactor",       ICSTOK_STEDSATFACTOR},
    {"STEDImmFraction",     ICSTOK_STEDIMMFRACTION},
    {"STEDVPPM",            ICSTOK_STEDVPPM},
    {"SPIMExcType",         ICSTOK_SPIMEXCTYPE},
    {"SPIMFillFactor",      ICSTOK_SPIMFILLFACTOR},
    {"SPIMPlaneNA",         ICSTOK_SPIMPLANENA},
    {"SPIMPlaneGaussWidth", ICSTOK_SPIMPLANEGAUSSWIDTH},
    {"SPIMPlanePropDir",    ICSTOK_SPIMPLANEPROPDIR},
    {"SPIMPlaneCenterOff",  ICSTOK_SPIMPLANECENTEROFF},
    {"SPIMPlaneFocusOff",   ICSTOK_SPIMPLANEFOCUSOF},
    {"ScatterModel",        ICSTOK_SCATTERMODEL},
    {"ScatterFreePath",     ICSTOK_SCATTERFREEPATH},
    {"ScatterRelContrib",   ICSTOK_SCATTERRELCONTRIB},
    {"ScatterBlurring",     ICSTOK_SCATTERBLURRING}
};


Ics_Symbol G_ValueSymbols[] =
{
    {"uncompressed",      ICSTOK_COMPR_UNCOMPRESSED},
    {"compress",          ICSTOK_COMPR_COMPRESS},
    {"gzip",              ICSTOK_COMPR_GZIP},
    {"integer",           ICSTOK_FORMAT_INTEGER},
    {"real",              ICSTOK_FORMAT_REAL},
    {"float",             ICSTOK_FORMAT_REAL}, /* CAUTION: this makes this list
                                                  one longer than expected */
    {"complex",           ICSTOK_FORMAT_COMPLEX},
    {"signed",            ICSTOK_SIGN_SIGNED},
    {"unsigned",          ICSTOK_SIGN_UNSIGNED},

    {"default",           ICSTOK_STATE_DEFAULT},
    {"estimated",         ICSTOK_STATE_ESTIMATED},
    {"reported",          ICSTOK_STATE_REPORTED},
    {"verified",          ICSTOK_STATE_VERIFIED},

};


Ics_SymbolList G_Categories =
{
    ICSTOK_LASTMAIN,
    G_CatSymbols
};


Ics_SymbolList G_SubCategories =
{
    ICSTOK_LASTSUB - ICSTOK_FIRSTSUB - 1,
    G_SubCatSymbols
};


Ics_SymbolList G_SubSubCategories =
{
    ICSTOK_LASTSUBSUB - ICSTOK_FIRSTSUBSUB - 1,
    G_SubSubCatSymbols
};


Ics_SymbolList G_Values =
{
    ICSTOK_LASTVALUE - ICSTOK_FIRSTVALUE - 1 + 1, /* See above: this list is one
                                                     longer than expected. */
    G_ValueSymbols
};