From 773fc3f7cc905945b3f1f4ef511815c31b2fcbee Mon Sep 17 00:00:00 2001 From: Julian Teichgraeber Date: Thu, 11 Jan 2024 18:36:58 +0000 Subject: [PATCH 1/5] new snowflake connector --- .../pages_wrap/page1_Data_Loading.py | 10 +-- .../streamlit/streamlit_utils.py | 65 +++++++++++++++++++ 2 files changed, 70 insertions(+), 5 deletions(-) diff --git a/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py b/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py index f1bf1e2..ca3af07 100644 --- a/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py +++ b/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py @@ -14,7 +14,7 @@ import copy -def page_1_data_loading(): +def page_1_data_loading(snowflake_connector=None): st.session_state.update(st.session_state) DATA_PAGE = "Data Loading" @@ -151,7 +151,7 @@ def page_1_data_loading(): ), on_change=swap_checkbox_state, args=("is_experiment",), - help="""If you have data from an experiment, you need to specify at least outcomes and variant. + help="""If you have data from an experiment, you need to specify at least outcomes and variant. If you only have pre-experiment data, you only need to specify pre-experiment data metrics.""", ) st.write( @@ -227,7 +227,7 @@ def page_1_data_loading(): key="pre_experiment_temp", help="""The pre-experiment data can be used for two things: 1. For sample size calculations on the Experiment Design page; - 2. the data is used to increase the sensitivity of an AB test (higher power). + 2. the data is used to increase the sensitivity of an AB test (higher power). This can be applied in the page Experiment Evaluation""", ) if st.session_state["is_experiment"]: @@ -316,8 +316,8 @@ def page_1_data_loading(): st.write( """ You can also generate the all results at this point. If you do not click the button, - the output will be computed as you click through the pages. - Generating the results may take a while and you can decide to do it now or later. + the output will be computed as you click through the pages. + Generating the results may take a while and you can decide to do it now or later. """ ) if st.button("Compute results"): diff --git a/tw_experimentation/streamlit/streamlit_utils.py b/tw_experimentation/streamlit/streamlit_utils.py index b0b42b2..4edc825 100644 --- a/tw_experimentation/streamlit/streamlit_utils.py +++ b/tw_experimentation/streamlit/streamlit_utils.py @@ -31,6 +31,7 @@ ) from tw_experimentation.bayes.bayes_test import BayesTest +from abc import ABC, abstractmethod import streamlit as st import pandas as pd @@ -58,6 +59,70 @@ ) +class SnowflakeConnection(ABC): + @property + @abstractmethod + def require_username(self): + pass + + def load_table( + self, + sql_query=None, + source_database=SOURCE_DATABASE, + source_schema=SOURCE_SCHEMA, + source_table=SOURCE_TABLE, + ): + if sql_query is None: + sql_query = f""" + select * from {source_database}.{source_schema}.{source_table} + """ + df = pd.read_sql(sql_query, self.connection) + + return df + + def close_connection(self): + if hasattr(self, "connection"): + self.connection.close() + + +class SnowflakeIndividualCredentials(SnowflakeConnection): + def __init__(self, username: str, password: str): + self.username = username + self.password = password + + @property + def require_username(self): + return True + + def connect( + self, + user=USERNAME, + account=ACCOUNT, + region=REGION, + authenticator=AUTHENTICATOR, + database=DATABASE, + warehouse=WAREHOUSE, + restart_engine=False, + ): + if self.engine is None or self.connection is None or restart_engine: + self.engine = create_engine( + URL( + account=account, + region=region, + user=user, + authenticator=authenticator, + database=database, + warehouse=warehouse, + ) + ) + self.connection = self.engine.connect() + return self.conection + + def dispose_engine(self): + if hasattr(self, "engine"): + self.engine.dispose() + + def fetch_data_from_table_name(warehouse: str, schema: str, table: str): st.session_state["sf_table_import"] = "Not implemented yet" From b65b15ed1b30af5c9f2ac177e31ee00a9ac92323 Mon Sep 17 00:00:00 2001 From: Julian Teichgraeber Date: Tue, 23 Jan 2024 12:09:59 +0000 Subject: [PATCH 2/5] Create snowflake_config.py --- tw_experimentation/snowflake_config.py | 12 ++++++++++++ 1 file changed, 12 insertions(+) create mode 100644 tw_experimentation/snowflake_config.py diff --git a/tw_experimentation/snowflake_config.py b/tw_experimentation/snowflake_config.py new file mode 100644 index 0000000..1bd211b --- /dev/null +++ b/tw_experimentation/snowflake_config.py @@ -0,0 +1,12 @@ +ACCOUNT = None +REGION = None +USERNAME = None +AUTHENTICATOR = None +DATABASE = None +WAREHOUSE = None +SOURCE_DATABASE = None +SOURCE_SCHEMA = None +SOURCE_TABLE = None +RESULT_DATABASE = None +RESULT_SCHEMA = None +RESULT_TABLE = None From c227f695eeb3fe1282a686cd961b4fdcaf3d37f5 Mon Sep 17 00:00:00 2001 From: Julian Teichgraeber Date: Tue, 23 Jan 2024 12:12:57 +0000 Subject: [PATCH 3/5] Update .gitignore --- .gitignore | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/.gitignore b/.gitignore index 8049155..ea37082 100644 --- a/.gitignore +++ b/.gitignore @@ -4,11 +4,14 @@ notebooks/catboost_info/ **/.ipynb_checkpoints/ **/.DS_Store .vscode -dist/ +dist/ **/.pkl .pytest_cache/ **/__pycache__/ +# only to be modified locally: +tw_experimentation/snowflake_config.py + # User-specific stuff: .idea/**/workspace.xml .idea/**/tasks.xml @@ -28,7 +31,6 @@ dist/ .idea/**/libraries *.tsv -*.pyc +*.pyc .ipynb_checkpoints */.ipynb_checkpoints/*__pycache__/ - From 5dbde76f04cb3e2cdc79b8ad66199fe5ceaf4fac Mon Sep 17 00:00:00 2001 From: Julian Teichgraeber Date: Tue, 23 Jan 2024 15:13:17 +0000 Subject: [PATCH 4/5] new snowflake connector class --- .../pages_wrap/page1_Data_Loading.py | 43 +++++++++++++------ .../streamlit/streamlit_utils.py | 13 +++++- 2 files changed, 43 insertions(+), 13 deletions(-) diff --git a/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py b/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py index a681c94..0a5f8f6 100644 --- a/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py +++ b/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py @@ -6,6 +6,7 @@ swap_checkbox_state, cols_to_select, exp_config_to_json, + SnowflakeConnection, ) from tw_experimentation.streamlit.streamlit_utils import generate_experiment_output from tw_experimentation.utils import ExperimentDataset @@ -14,7 +15,7 @@ import copy -def page_1_data_loading(snowflake_connector=None): +def page_1_data_loading(snowflake_connector=SnowflakeConnection()): st.session_state.update(st.session_state) DATA_PAGE = "Data Loading" @@ -25,6 +26,8 @@ def page_1_data_loading(snowflake_connector=None): st.session_state["last_page"] = DATA_PAGE + if st.session_state["snowflake_connection"] is None: + st.session_state["snowflake_connection"] = snowflake_connector st.header("Data import") st.write( "If you simply want to use the sample size calculator without any dataset, " @@ -40,7 +43,7 @@ def page_1_data_loading(snowflake_connector=None): if file is not None: df = load_data(file) - st.session_state["data_loader"].df = df + st.session_state["df_temp"] = df st.write("File uploaded") if load_type == "Snowflake query": @@ -92,12 +95,28 @@ def page_1_data_loading(snowflake_connector=None): ) if st.button("Fetch data from snowflake"): - st.session_state["data_loader"].pull_snowflake_table( - **snowflake_pull_kwargs + st.session_state["snowflake_connection"].connect( + restart_engine=restart_snowflake ) + # st.session_state["data_loader"].pull_snowflake_table( + # **snowflake_pull_kwargs + # ) + if snowflake_import == "query": + st.session_state["df_temp"] = st.session_state[ + "snowflake_connection" + ].load_table(sql_query=st.session_state["query"]) + elif snowflake_import == "table name": + st.session_state["df_temp"] = st.session_state[ + "snowflake_connection" + ].load_table( + source_database=st.session_state["warehouse"], + source_schema=st.session_state["schema"], + source_table=st.session_state["table"], + user=st.session_state["snowflake_username"], + ) st.session_state.has_snowflake_connection = True - if st.session_state["data_loader"].df is not None: + if st.session_state["df_temp"] is not None: st.divider() with st.expander("Load configuration from json"): st.write( @@ -171,7 +190,7 @@ def page_1_data_loading(snowflake_connector=None): ] ] cols_for_selection = cols_to_select( - st.session_state["data_loader"].df.columns, cols_to_exclude + st.session_state["df_temp"].columns, cols_to_exclude ) if st.session_state["is_experiment"]: @@ -283,7 +302,7 @@ def page_1_data_loading(snowflake_connector=None): len(st.session_state["pre_experiment"]) > 0 ), "Must specify at least one pre-experiment metric" st.session_state.ed = ExperimentDataset( - data=copy.deepcopy(st.session_state["data_loader"].df), + data=copy.deepcopy(st.session_state["df_temp"]), variant="", targets="", pre_experiment_cols=st.session_state["pre_experiment"], @@ -294,7 +313,7 @@ def page_1_data_loading(snowflake_connector=None): if not st.session_state["is_dynamic_experiment_temp"]: st.session_state["timestamp"] = None st.session_state.ed = ExperimentDataset( - data=copy.deepcopy(st.session_state["data_loader"].df), + data=copy.deepcopy(st.session_state["df_temp"]), variant=st.session_state["variant"], targets=st.session_state["outcomes"], date=( @@ -302,9 +321,9 @@ def page_1_data_loading(snowflake_connector=None): if st.session_state["is_dynamic_experiment"] else None ), - n_variants=st.session_state["data_loader"] - .df[st.session_state["variant"]] - .nunique(), + n_variants=st.session_state["df_temp"][ + st.session_state["variant"] + ].nunique(), pre_experiment_cols=st.session_state["pre_experiment"], segments=st.session_state["segments"], ) @@ -328,7 +347,7 @@ def page_1_data_loading(snowflake_connector=None): st.session_state["timestamp"] = None st.cache_data.clear() generate_experiment_output( - copy.deepcopy(st.session_state["data_loader"].df), + copy.deepcopy(st.session_state["df_temp"]), variant=st.session_state["variant"], targets=st.session_state["outcomes"], date_created=( diff --git a/tw_experimentation/streamlit/streamlit_utils.py b/tw_experimentation/streamlit/streamlit_utils.py index 4edc825..e26909e 100644 --- a/tw_experimentation/streamlit/streamlit_utils.py +++ b/tw_experimentation/streamlit/streamlit_utils.py @@ -65,6 +65,10 @@ class SnowflakeConnection(ABC): def require_username(self): pass + @abstractmethod + def connect(self, restart_engine=False, **kwargs): + pass + def load_table( self, sql_query=None, @@ -96,14 +100,19 @@ def require_username(self): def connect( self, + restart_engine=False, user=USERNAME, account=ACCOUNT, region=REGION, authenticator=AUTHENTICATOR, database=DATABASE, warehouse=WAREHOUSE, - restart_engine=False, ): + credentials = [user, account, region, authenticator, database, warehouse] + assert all( + [False if cred is None else True for cred in credentials] + ), "Please specify your snowflake credentials in " + "tw_experimentation/snowflake_config.py" if self.engine is None or self.connection is None or restart_engine: self.engine = create_engine( URL( @@ -168,6 +177,8 @@ def initalise_session_states(): "timestamp_temp": None, "ed": None, "data_loader": PullAndMatchData(), + "snowflake_connection": None, + "df_temp": None, "is_defined_data_model": False, "evaluate_CUPED": False, "exp_design_alpha": 5, From 2a0ac2c7e5655ea27fa65c8bc8111754c79f0f29 Mon Sep 17 00:00:00 2001 From: Julian Teichgraeber Date: Wed, 24 Jan 2024 16:47:25 +0000 Subject: [PATCH 5/5] flexible snowflake authenticator --- .gitignore | 2 +- poetry.lock | 720 +++++++++--------- pyproject.toml | 2 +- tw_experimentation/snowflake_config.py | 12 - .../pages_wrap/page1_Data_Loading.py | 73 +- .../streamlit/streamlit_utils.py | 84 +- 6 files changed, 449 insertions(+), 444 deletions(-) delete mode 100644 tw_experimentation/snowflake_config.py diff --git a/.gitignore b/.gitignore index ea37082..80817c9 100644 --- a/.gitignore +++ b/.gitignore @@ -10,7 +10,7 @@ dist/ **/__pycache__/ # only to be modified locally: -tw_experimentation/snowflake_config.py +**/snowflake_config.json # User-specific stuff: .idea/**/workspace.xml diff --git a/poetry.lock b/poetry.lock index d540d3a..8cab883 100644 --- a/poetry.lock +++ b/poetry.lock @@ -244,19 +244,22 @@ dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] [[package]] name = "beautifulsoup4" -version = "4.12.2" +version = "4.12.3" description = "Screen-scraping library" optional = false python-versions = ">=3.6.0" files = [ - {file = "beautifulsoup4-4.12.2-py3-none-any.whl", hash = "sha256:bd2520ca0d9d7d12694a53d44ac482d181b4ec1888909b035a3dbf40d0f57d4a"}, - {file = "beautifulsoup4-4.12.2.tar.gz", hash = "sha256:492bbc69dca35d12daac71c4db1bfff0c876c00ef4a2ffacce226d4638eb72da"}, + {file = "beautifulsoup4-4.12.3-py3-none-any.whl", hash = "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed"}, + {file = 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optional = false -python-versions = ">=3.5" +python-versions = ">=3.7" files = [ - {file = "toolz-0.12.0-py3-none-any.whl", hash = "sha256:2059bd4148deb1884bb0eb770a3cde70e7f954cfbbdc2285f1f2de01fd21eb6f"}, - {file = "toolz-0.12.0.tar.gz", hash = "sha256:88c570861c440ee3f2f6037c4654613228ff40c93a6c25e0eba70d17282c6194"}, + {file = "toolz-0.12.1-py3-none-any.whl", hash = "sha256:d22731364c07d72eea0a0ad45bafb2c2937ab6fd38a3507bf55eae8744aa7d85"}, + {file = "toolz-0.12.1.tar.gz", hash = "sha256:ecca342664893f177a13dac0e6b41cbd8ac25a358e5f215316d43e2100224f4d"}, ] [[package]] @@ -5291,12 +5284,12 @@ files = [ [[package]] name = "wise-pizza" -version = "0.2.3" +version = "0.2.0" description = "A library to find and visualise the most interesting slices in multidimensional data" optional = false python-versions = "*" files = [ - {file = "wise-pizza-0.2.3.tar.gz", hash = "sha256:31302fbc49d3b192855d5aa288d3f6fd2e4a766fa58eb7d57940c0c2f720d2af"}, + {file = "wise-pizza-0.2.0.tar.gz", hash = "sha256:6627df8459d7ad3f8f2573c55322ed2bea8b100a8d42dcc53fd5a1ca470831d8"}, ] [package.dependencies] @@ -5310,7 +5303,6 @@ plotly = "*" pytest = "*" scikit_learn = "*" scipy = ">=1.8.0" -streamlit = "1.28.0" tqdm = "*" [package.extras] diff --git a/pyproject.toml b/pyproject.toml index 22355bb..fe9fffa 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "tw-experimentation" -version = "0.1.2.2" +version = "0.1.2.3" description = "Wise AB platform" authors = ["Wise"] readme = "README.md" diff --git a/tw_experimentation/snowflake_config.py b/tw_experimentation/snowflake_config.py deleted file mode 100644 index 1bd211b..0000000 --- a/tw_experimentation/snowflake_config.py +++ /dev/null @@ -1,12 +0,0 @@ -ACCOUNT = None -REGION = None -USERNAME = None -AUTHENTICATOR = None -DATABASE = None -WAREHOUSE = None -SOURCE_DATABASE = None -SOURCE_SCHEMA = None -SOURCE_TABLE = None -RESULT_DATABASE = None -RESULT_SCHEMA = None -RESULT_TABLE = None diff --git a/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py b/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py index 0a5f8f6..a802e8b 100644 --- a/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py +++ b/tw_experimentation/streamlit/pages_wrap/page1_Data_Loading.py @@ -6,7 +6,7 @@ swap_checkbox_state, cols_to_select, exp_config_to_json, - SnowflakeConnection, + SnowflakeIndividualCredentials, ) from tw_experimentation.streamlit.streamlit_utils import generate_experiment_output from tw_experimentation.utils import ExperimentDataset @@ -15,7 +15,7 @@ import copy -def page_1_data_loading(snowflake_connector=SnowflakeConnection()): +def page_1_data_loading(snowflake_connector=SnowflakeIndividualCredentials()): st.session_state.update(st.session_state) DATA_PAGE = "Data Loading" @@ -53,12 +53,6 @@ def page_1_data_loading(snowflake_connector=SnowflakeConnection()): if snowflake_import == "query": st.text_input("SQL query", key="query") - snowflake_pull_kwargs = { - "sql_query": st.session_state["query"], - "user": st.session_state["snowflake_username"], - "restart_engine": restart_snowflake, - } - if snowflake_import == "table name": col11, col12, col13 = st.columns(3) @@ -74,33 +68,61 @@ def page_1_data_loading(snowflake_connector=SnowflakeConnection()): ) with col13: st.text_input("Table", key="table") - snowflake_pull_kwargs = dict( - source_database=st.session_state["warehouse"], - source_schema=st.session_state["schema"], - source_table=st.session_state["table"], - user=st.session_state["snowflake_username"], - restart_engine=restart_snowflake, - ) - enter_username = False + enter_credentials = False if not st.session_state.has_snowflake_connection: - enter_username = True + enter_credentials = True else: restart_snowflake = st.checkbox("Restart snowflake connection") - st.session_state["snowflake_username"] = st.text_input( - "Snowflake username", - st.session_state["snowflake_username"], - disabled=not (enter_username or restart_snowflake), - ) + if len(st.session_state["snowflake_connection"].input_configs) > 0: + with st.expander("Load snowflake configuration from json"): + st.write( + """ + You can load a snowflake configuration from a json file. + """ + ) + st.write( + """ + You can upload a json file of the format, e.g., + { + "user" = "USERNAME", + "region" = "REGION" + } + """ + ) + config_json_snowflake = st.file_uploader( + "Upload a json config file for snowflake", type="json" + ) + + if config_json_snowflake is not None: + try: + json_content_snowflake = config_json_snowflake.getvalue() + exp_config = json.loads(json_content_snowflake) + st.write(exp_config) + for config, value in exp_config.items(): + st.session_state["snowflake_" + config] = value + except json.JSONDecodeError: + st.error("Invalid JSON file. Please upload a valid JSON file.") + for config_variable in st.session_state["snowflake_connection"].input_configs: + initalise_session_states({"snowflake_" + config_variable: ""}) + st.text_input( + config_variable, + st.session_state["snowflake_" + config_variable], + disabled=not (enter_credentials or restart_snowflake), + ) if st.button("Fetch data from snowflake"): + account_configs = { + config_variable: st.session_state["snowflake_" + config_variable] + for config_variable in st.session_state[ + "snowflake_connection" + ].input_configs + } + st.session_state["snowflake_connection"].account_config = account_configs st.session_state["snowflake_connection"].connect( restart_engine=restart_snowflake ) - # st.session_state["data_loader"].pull_snowflake_table( - # **snowflake_pull_kwargs - # ) if snowflake_import == "query": st.session_state["df_temp"] = st.session_state[ "snowflake_connection" @@ -112,7 +134,6 @@ def page_1_data_loading(snowflake_connector=SnowflakeConnection()): source_database=st.session_state["warehouse"], source_schema=st.session_state["schema"], source_table=st.session_state["table"], - user=st.session_state["snowflake_username"], ) st.session_state.has_snowflake_connection = True diff --git a/tw_experimentation/streamlit/streamlit_utils.py b/tw_experimentation/streamlit/streamlit_utils.py index 7e3603f..eb7aff1 100644 --- a/tw_experimentation/streamlit/streamlit_utils.py +++ b/tw_experimentation/streamlit/streamlit_utils.py @@ -29,9 +29,7 @@ NormalityChecks, ) from tw_experimentation.bayes.bayes_test import BayesTest - from tw_experimentation.constants import ( - COLORSCALES, ACCOUNT, REGION, USERNAME, @@ -44,6 +42,7 @@ RESULT_DATABASE, RESULT_SCHEMA, RESULT_TABLE, + COLORSCALES, ) from abc import ABC, abstractmethod @@ -55,24 +54,26 @@ from sqlalchemy import create_engine import json -from typing import Optional, List, Union - -import streamlit as st - -import pandas as pd -from scipy.stats import chi2_contingency -from snowflake.sqlalchemy import URL -from sqlalchemy import create_engine -import json - -from typing import Optional, List, Union +from typing import Optional, List, Union, Dict class SnowflakeConnection(ABC): + def __init__(self): + self.connection = None + self.engine = None + self._config_variables = [] + self._account_config = dict() + @abstractmethod def connect(self, restart_engine=False, **kwargs): pass + @property + @abstractmethod + def input_configs(self): + """List of variables to configure for snowflake connection""" + return [] + def load_table( self, sql_query=None, @@ -94,38 +95,37 @@ def close_connection(self): class SnowflakeIndividualCredentials(SnowflakeConnection): - def __init__(self, username: str, password: str): - self.username = username - self.password = password - def connect( self, restart_engine=False, - user=USERNAME, - account=ACCOUNT, - region=REGION, - authenticator=AUTHENTICATOR, - database=DATABASE, - warehouse=WAREHOUSE, ): - credentials = [user, account, region, authenticator, database, warehouse] - assert all( - [False if cred is None else True for cred in credentials] - ), "Please specify your snowflake credentials in " - "tw_experimentation/snowflake_config.py" + engine_kwargs = self._account_config if self.engine is None or self.connection is None or restart_engine: - self.engine = create_engine( - URL( - account=account, - region=region, - user=user, - authenticator=authenticator, - database=database, - warehouse=warehouse, - ) - ) + self.engine = create_engine(URL(**engine_kwargs)) self.connection = self.engine.connect() - return self.conection + return self.connection + + @property + def input_configs(self): + self.config_variables = [ + "user", + "account", + "region", + "authenticator", + "database", + "warehouse", + ] + return self.config_variables + + @property + def account_config(self): + return self._account_config + + @account_config.setter + def account_config(self, value): + # for config_variable in value.keys(): + # assert config_variable in self._config_variables + self._account_config = value def dispose_engine(self): if hasattr(self, "engine"): @@ -153,7 +153,7 @@ def exp_config_to_json(): return config_json -def initalise_session_states(): +def initalise_session_states(additional_params: Optional[Dict] = dict()): STATE_VARS = { "last_page": "Main", "output_loaded": None, @@ -207,6 +207,10 @@ def initalise_session_states(): if k not in st.session_state: st.session_state[k] = v + for k, v in additional_params.items(): + if k not in st.session_state: + st.session_state[k] = v + def load_data(path: str): df = pd.read_csv(path)