v0.10.0

[0.10.0] - 2022-10-28

Documentation

• Display feature flags in docs.rs (#338)

Miscellaneous Tasks

• Set msrv to 1.57.0 (result of cargo msrv) (#322)
• Fix tag_pattern in cliff.toml (#330)
• Update github actions (#332)
• Add github actions to monthly dependabot (#333)
• Update bindgen requirement from 0.60.1 to 0.61.0 (#336)
• Bump styfle/cancel-workflow-action from 0.6.0 to 0.11.0 (#334)

Performance

• Use Bookmark in forward simulation example (#318)

Refactor

• Streamline internal macros for adding nodes (#309)
• Remove internal ffi module (#310)
• Panics compatible with earlier rustc (#311)
• Remove type name from SizeType Display output. (#315)
• [breaking] TableCollection::simplify returns Option<&[NodeId]> (#316)
• [breaking] Conversion from row id to usize is now fallible. (#319)
• Use clap::Parser in example program. (#320)
• Remove pontential panic! when instantiating table rows. (#329)
• Examples/tree_traversals.rs now uses clap derive (#337)

Styling

• Remove unneeded ( ) from match. (#323)
• Use auto-deref for pointer deref. (#325)
• Fix +nightly clippy lints for all targets/features. (#326)

Testing

• Improve test work flow (#331)

[0.10.0-alpha.1] - 2022-07-31

Bug Fixes

• Replace crate with $crate in macros (#287)

Features

• Add tskit::OwnedMutationTable (#281)
• Add tskit::OwnedSiteTable (#283)
• Add tskit::OwnedIndividualTable (#284)
• Add tskit::OwnedMigrationTable (#285)
• Add tskit::provenance::OwnedProvenanceTable (#286)
• Set tables in collection from owned tables. (#288)
• [breaking] Impl Send/Sync for TreeSequence (#297)

Miscellaneous Tasks

• Update to C API 1.1.1 (#304)

Performance

• [breaking] Implement slice access to individual data (#292)
• [breaking] Eliminate several copies from C to rust (#293)

Refactor

• Deduplicate code for adding node table rows. (#278)
• Use macros to implement adding table rows. (#279)
• Add new macro to build owned tables (#282)
• Separate tree ownership from API. (#300)
• Bring back generic syntax for adding node table rows. (#302)
• [breaking] Display for new types now omits type name. (#305)
• Remove MBox for tsk_treeseq_t storage (#306)

[0.10.0-alpha.0] - 2022-07-19

Bug Fixes

• Fix memory leak in TreeSequence::simplify (#274)
• Fix leak in TableCollection::deepcopy (#275)
• Fix leak in TreeSequence::dump_tables (#276)

Documentation

• Fix warnings from "cargo doc" (#255)

Features

• Make load from file generic over AsRef (#254)
• Add tskit::OwnedPopulationTable (#267)
• Add tskit::OwnedEdgeTable (#268)
• Add tskit::OwnedNodeTable (#273)

Miscellaneous Tasks

• Add cliff.toml (config file for git-cliff) (#257)
• Prefix "chore: " to dependabot.yml (#258)
• Use cargo-hack to streamline CI. (#259)
• Add cargo-valgrind CI workflow (#277)

Refactor

• Macro metadata_to_vector intputs changed. (#263)
• Add macros to implement owned tables. (#269)

Testing

• Add another experimental trait idea for metadata. (#261)
• Redo doctest: TableCollection::new_from_file (#272)