0.12.0

[0.12.0] - 2022-12-23

Documentation

• Book section on lending row iterators (#406)
• Advanced metadata topics in book (#407)
• Book chapter on edge differences (#417)

Features

• TreeSequence::edge_differences_iter (#410)
• Add convience functions to get usize from row ids. (#413)
• Tree::total_branch_length now works. (#429)
• Add getters/setters for Bookmark. (#437)

Miscellaneous Tasks

• Update bindgen requirement from 0.61.0 to 0.63.0 (#415)

Refactor

• [breaking] Replace Deref with delegation of TableViews API (#409)
• [breaking] Remove TskitTypeAccess trait (#411)
• Allow TreeSequence::edge_differences_iter to Err. (#412)
• [breaking] Usize to SizeType conversion is now fallible. (#419)
• Macros only use newtype public API. (#420)
• Move newtypes into module (#421)
• The raw_metadata fn for tables now takes Into. (#425)
• Add low-level table wrappers to sys (#426)
• Generalize slice building in sys (#427)
• Remove many unsafe calls from tree_interface.rs (#428)
• Add sys::LLTreeSeq. (#430)
• Sys module no longer depends on TskitError (#431)
• Move Drop details for TreeSequence to sys. (#432)
• Add low level owning tables to sys (#433)
• Tidy up table definitions (#434)

Styling

• [breaking] Rename all OwnedX tables to OwningX. (#408)
• Replace column access macro with generic fn (#422)
• Generic fns for ragged column access (#423)
• Use fn to get array slices from Trees. (#424)