From eda8c5fb61f43c850dc1c01f262cc6bd6731f07e Mon Sep 17 00:00:00 2001 From: cat-bro Date: Wed, 28 Aug 2024 13:43:04 +1000 Subject: [PATCH] Set `tmp_dir: true` for built-in converter tools These can create a lot of temporary files if there is sorting involved and for the most part they clean up but not if the job is cancelled by the user --- .../production/total_perspective_vortex/tools.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml index 345a14433..f2a0649b8 100644 --- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml +++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml @@ -3388,6 +3388,9 @@ tools: not user or not 'cellranger' in [role.name for role in user.all_roles() if not role.deleted] fail: Your account has not been given access to cellranger. Contact help@genome.edu.au if you think this is in error. + CONVERTER.*: + params: + tmp_dir: true CONVERTER_bedgraph_to_bigwig: mem: 30 ^fgenesh$: