diff --git a/Examples/adam_example.ipynb b/Examples/adam_example.ipynb index 5eb821c..ae611e8 100644 --- a/Examples/adam_example.ipynb +++ b/Examples/adam_example.ipynb @@ -26,278 +26,6 @@ "This notebook is designed to run on the current commit of Multivelo on GitHub. It utilizes features that are not yet available on the current pip release. As such, it is recommended to download Multivelo from GitHub and use that instead of the version available on PyPI." ] }, - { - "cell_type": "code", - "execution_count": 1, - "id": "449da028", - "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Defaulting to user installation because normal site-packages is not writeable\n", - "Processing /nfs/turbo/umms-welchjd/jrepucci/multivelo_w_adam_tests_v3/MultiVelo\n", - " Installing build dependencies ... \u001b[?25ldone\n", - "\u001b[?25h Getting requirements to build wheel ... \u001b[?25ldone\n", - "\u001b[?25h Preparing metadata (pyproject.toml) ... \u001b[?25ldone\n", - "\u001b[?25hRequirement already satisfied: numpy>=1.17 in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from multivelo==0.1.3) (1.23.5)\n", - "Requirement already satisfied: anndata>=0.7.5 in /home/jrepucci/.local/lib/python3.10/site-packages (from multivelo==0.1.3) (0.10.5.post1)\n", - "Requirement already satisfied: umap-learn>=0.3.10 in /home/jrepucci/.local/lib/python3.10/site-packages (from multivelo==0.1.3) (0.5.5)\n", - 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"Requirement already satisfied: sniffio>=1.1 in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from anyio<4,>=3.1.0->jupyter-server>=1.8->nbclassic>=0.4.7->notebook>=4.4.1->widgetsnbextension~=3.6.0->ipywidgets<=7.7.1->multivelo==0.1.3) (1.2.0)\n", - "Requirement already satisfied: pycparser in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi->notebook>=4.4.1->widgetsnbextension~=3.6.0->ipywidgets<=7.7.1->multivelo==0.1.3) (2.21)\n", - "Building wheels for collected packages: multivelo\n", - " Building wheel for multivelo (pyproject.toml) ... \u001b[?25ldone\n", - "\u001b[?25h Created wheel for multivelo: filename=multivelo-0.1.3-py3-none-any.whl size=66061 sha256=97c131aec70735f2838c5da74baf749ca347db3634128fb5b443af9151659f08\n", - " Stored in directory: /tmp/pip-ephem-wheel-cache-2zw494df/wheels/c6/74/a3/0d0daf6f1eb5c1b447d8baf79255ee6b0aa462c59ef88f5194\n", - "Successfully built multivelo\n", - "Installing collected packages: widgetsnbextension, ipywidgets, multivelo\n", - " Attempting uninstall: widgetsnbextension\n", - " Found existing installation: widgetsnbextension 4.0.11\n", - " Uninstalling widgetsnbextension-4.0.11:\n", - " Successfully uninstalled widgetsnbextension-4.0.11\n", - " Attempting uninstall: ipywidgets\n", - " Found existing installation: ipywidgets 8.1.0\n", - " Uninstalling ipywidgets-8.1.0:\n", - " Successfully uninstalled ipywidgets-8.1.0\n", - " Attempting uninstall: multivelo\n", - " Found existing installation: multivelo 0.1.3\n", - " Uninstalling multivelo-0.1.3:\n", - " Successfully uninstalled multivelo-0.1.3\n", - "Successfully installed ipywidgets-7.7.1 multivelo-0.1.3 widgetsnbextension-3.6.7\n", - "\u001b[33mWARNING: There was an error checking the latest version of pip.\u001b[0m\u001b[33m\n", - "\u001b[0mDefaulting to user installation because normal site-packages is not writeable\n", - "Collecting ipywidgets==8.1.0\n", - " Using cached ipywidgets-8.1.0-py3-none-any.whl (139 kB)\n", - "Requirement already satisfied: comm>=0.1.3 in /home/jrepucci/.local/lib/python3.10/site-packages (from ipywidgets==8.1.0) (0.2.1)\n", - "Collecting widgetsnbextension~=4.0.7\n", - " Using cached widgetsnbextension-4.0.11-py3-none-any.whl (2.3 MB)\n", - "Requirement already satisfied: ipython>=6.1.0 in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from ipywidgets==8.1.0) (8.10.0)\n", - "Requirement already satisfied: jupyterlab-widgets~=3.0.7 in /home/jrepucci/.local/lib/python3.10/site-packages (from ipywidgets==8.1.0) (3.0.10)\n", - "Requirement already satisfied: traitlets>=4.3.1 in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from ipywidgets==8.1.0) (5.7.1)\n", - "Requirement already satisfied: decorator in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from ipython>=6.1.0->ipywidgets==8.1.0) (5.1.1)\n", - "Requirement already satisfied: pexpect>4.3 in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from ipython>=6.1.0->ipywidgets==8.1.0) (4.8.0)\n", - "Requirement already satisfied: pickleshare in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from ipython>=6.1.0->ipywidgets==8.1.0) (0.7.5)\n", - "Requirement already satisfied: backcall in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from ipython>=6.1.0->ipywidgets==8.1.0) (0.2.0)\n", - "Requirement already satisfied: jedi>=0.16 in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from ipython>=6.1.0->ipywidgets==8.1.0) (0.18.1)\n", - "Requirement already satisfied: stack-data in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from ipython>=6.1.0->ipywidgets==8.1.0) (0.2.0)\n", - "Requirement already satisfied: matplotlib-inline in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from ipython>=6.1.0->ipywidgets==8.1.0) (0.1.6)\n", - "Requirement already satisfied: prompt-toolkit<3.1.0,>=3.0.30 in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from ipython>=6.1.0->ipywidgets==8.1.0) (3.0.36)\n", - "Requirement already satisfied: pygments>=2.4.0 in /home/jrepucci/.local/lib/python3.10/site-packages (from ipython>=6.1.0->ipywidgets==8.1.0) (2.17.2)\n", - "Requirement already satisfied: parso<0.9.0,>=0.8.0 in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from jedi>=0.16->ipython>=6.1.0->ipywidgets==8.1.0) (0.8.3)\n", - "Requirement already satisfied: ptyprocess>=0.5 in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from pexpect>4.3->ipython>=6.1.0->ipywidgets==8.1.0) (0.7.0)\n", - "Requirement already satisfied: wcwidth in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from prompt-toolkit<3.1.0,>=3.0.30->ipython>=6.1.0->ipywidgets==8.1.0) (0.2.5)\n", - "Requirement already satisfied: asttokens in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from stack-data->ipython>=6.1.0->ipywidgets==8.1.0) (2.0.5)\n", - "Requirement already satisfied: executing in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from stack-data->ipython>=6.1.0->ipywidgets==8.1.0) (0.8.3)\n", - "Requirement already satisfied: pure-eval in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from stack-data->ipython>=6.1.0->ipywidgets==8.1.0) (0.2.2)\n", - "Requirement already satisfied: six in /sw/pkgs/arc/python3.10-anaconda/2023.03/lib/python3.10/site-packages (from asttokens->stack-data->ipython>=6.1.0->ipywidgets==8.1.0) (1.16.0)\n" - ] - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Installing collected packages: widgetsnbextension, ipywidgets\n", - " Attempting uninstall: widgetsnbextension\n", - " Found existing installation: widgetsnbextension 3.6.7\n", - " Uninstalling widgetsnbextension-3.6.7:\n", - " Successfully uninstalled widgetsnbextension-3.6.7\n", - " Attempting uninstall: ipywidgets\n", - " Found existing installation: ipywidgets 7.7.1\n", - " Uninstalling ipywidgets-7.7.1:\n", - " Successfully uninstalled ipywidgets-7.7.1\n", - "\u001b[31mERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.\n", - "multivelo 0.1.3 requires ipywidgets<=7.7.1, but you have ipywidgets 8.1.0 which is incompatible.\u001b[0m\u001b[31m\n", - "\u001b[0mSuccessfully installed ipywidgets-8.1.0 widgetsnbextension-4.0.11\n", - "\u001b[33mWARNING: There was an error checking the latest version of pip.\u001b[0m\u001b[33m\n", - "\u001b[0m" - ] - } - ], - "source": [ - "!pip3 install /nfs/turbo/umms-welchjd/jrepucci/multivelo_w_adam_tests_v3/MultiVelo\n", - "!pip3 install ipywidgets==8.1.0" - ] - }, { "cell_type": "code", "execution_count": 2, @@ -306,8 +34,7 @@ "ExecuteTime": { "end_time": "2022-05-09T20:11:58.142534Z", "start_time": "2022-05-09T20:11:54.599165Z" - }, - "scrolled": false + } }, "outputs": [ { @@ -693,9 +420,9 @@ ], "metadata": { "kernelspec": { - "display_name": "rapidsaistuff2", + "display_name": "Python 3 (ipykernel)", "language": "python", - "name": "rapidsaistuff2" + "name": "python3" }, "language_info": { "codemirror_mode": { @@ -707,7 +434,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.10.13" + "version": "3.11.4" }, "toc": { "base_numbering": 1,