diff --git a/README.md b/README.md index 0446ed6..097c152 100644 --- a/README.md +++ b/README.md @@ -31,6 +31,14 @@ PDV supports visualizing N-linked intact glycopeptide identification result (ide [](http://www.psidev.info/usi) + +#### [Mirror plot](https://github.com/wenbostar/PDV/wiki/Mirror-plot:-observed-vs-predicted-spectra) (Experimental spectrum VS predicted spectrum using deep learning) + +Top panel: experimental spectrum, bottom panel: predicted spectrum using deep learning. + + + + #### Database searching: | Software | Example files | @@ -60,7 +68,7 @@ PDV supports visualizing N-linked intact glycopeptide identification result (ide | Software | Example files | | ----------------|:---------------| -| [Casanovo](https://github.com/Noble-Lab/casanovo) | mgf:mzTab | +| [Casanovo](https://github.com/Noble-Lab/casanovo) | [Manual](https://github.com/wenbostar/PDV/wiki/Visualize-Casanovo-result) | | [Novor](https://www.ncbi.nlm.nih.gov/pubmed/26122521) | [mgf](http://pdv.zhang-lab.org/data/download/test_data/msdata/SF_200217_U2OS_TiO2_HCD_OT_rep1.mgf.gz):[csv](http://pdv.zhang-lab.org/data/download/test_data/novor/SF_200217_U2OS_TiO2_HCD_OT_rep1.novor.csv.gz) (only support the Novor result generated through [DeNovoGUI](https://github.com/compomics/denovogui)) | | [DeepNovo](https://github.com/nh2tran/DeepNovo) | [mgf](http://pdv.zhang-lab.org/data/download/test_data/deepnovo/peaks.db.mgf.test.dup.mgf.gz):[txt](http://pdv.zhang-lab.org/data/download/test_data/deepnovo/output.deepnovo_db.tab) | | [PepNovo+](http://proteomics.ucsd.edu/software-tools/531-2/) | [mgf](http://pdv.zhang-lab.org/data/download/test_data/msdata/SF_200217_U2OS_TiO2_HCD_OT_rep1.mgf.gz):[txt](http://pdv.zhang-lab.org/data/download/test_data/pepnovo/SF_200217_U2OS_TiO2_HCD_OT_rep1.mgf.out) |