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Issue a release & publish on Bioconda? #45

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photocyte opened this issue Jul 21, 2023 · 1 comment
Open

Issue a release & publish on Bioconda? #45

photocyte opened this issue Jul 21, 2023 · 1 comment

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@photocyte
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Hi there,

Big fan of flo. Has worked really well for my research. But it would be even better if flo were on bioconda and had its dependencies explicitly linked, namely:

conda install -c bioconda genometools-genometools
conda install -c conda-forge parallel
conda install -c bioconda -y ucsc-liftup ucsc-fasplit ucsc-liftover ucsc-axtchain ucsc-chainnet ucsc-blat ucsc-chainsort ucsc-fatotwobit ucsc-twobitinfo ucsc-chainsplit ucsc-chainmergesort ucsc-netchainsubset

A first step towards that, I believe would be issuing a Release here on this Github Repo. Then the Bioconda recipe could point to that release.

All the best,
-Tim

@photocyte
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I got started on a Bioconda recipe (photocyte/bioconda-recipes@master...photocyte:bioconda-recipes:TRF_flo_branch).

I am by no means an expert & would be happy to defer to yall to publish such a recipe.

But, it also seems there is no software License for flo. I wonder if you might consider adding one so it could be used with Bioconda?

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