From f9c3a962806ef83fa4dbf6a57e88855a622f7bc2 Mon Sep 17 00:00:00 2001 From: Vitaly Voloshin Date: Tue, 1 Oct 2024 13:26:02 +0100 Subject: [PATCH] Fixing dates in popgen day 5 tutorial --- .../practicals/population_genetics/pt-5-popgen.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/current-year/practicals/population_genetics/pt-5-popgen.md b/current-year/practicals/population_genetics/pt-5-popgen.md index 99b3259..8abcb64 100644 --- a/current-year/practicals/population_genetics/pt-5-popgen.md +++ b/current-year/practicals/population_genetics/pt-5-popgen.md @@ -39,7 +39,7 @@ package in R. ## 2. Input into R As before, create a directory for this practical (e.g., -`2023-10-xx-population_genetics`). Copy over the R markdown notebook +`2024-10-01-population_genetics`). Copy over the R markdown notebook `/shared/data/popgen/popgen.Rmd` to your project directory. Create `input/` subdirectory and symlink the `snp.vcf.gz` and `snp.vcf.gz.tbi` file we created in the last practical to it. If you don't have these files, you can use the @@ -47,10 +47,10 @@ ones in: `/shared/data/backup_vcf`. The output of the `tree` command should look like this: ```bash -2023-10-xx-population_genetics +2024-10-01-population_genetics ├── input -│   ├── snp.vcf.gz -> /home/alice/2024-08-01-genotyping/results/snp.vcf.gz -│   └── snp.vcf.gz.tbi -> /home/alice/2024-08-01-genotyping/results/snp.vcf.gz.tbi +│   ├── snp.vcf.gz -> /home/alice/2024-09-30-genotyping/results/snp.vcf.gz +│   └── snp.vcf.gz.tbi -> /home/alice/2024-09-30-genotyping/results/snp.vcf.gz.tbi └── popgen.Rmd ```