From 332c7c51112471fc39c43e1dc4dce3937510bf07 Mon Sep 17 00:00:00 2001 From: ysBach Date: Wed, 8 Sep 2021 20:44:50 +0900 Subject: [PATCH] re-run the analysis code (no change) --- polarimetry/figs/corner-nobound.pdf | Bin 346168 -> 346168 bytes polarimetry/figs/corner.pdf | Bin 323927 -> 323927 bytes polarimetry/figs/observation-fit.pdf | Bin 25361 -> 25361 bytes .../figs/observation-mcmc-comb-fullrange.pdf | Bin 168594 -> 168594 bytes polarimetry/figs/observation-mcmc-comb.pdf | Bin 172219 -> 172219 bytes polarimetry/figs/trace-nobound.pdf | Bin 1488855 -> 1488855 bytes polarimetry/figs/trace.pdf | Bin 1459507 -> 1459507 bytes polarimetry/pol_analyzer.ipynb | 22 +++++++++--------- 8 files changed, 11 insertions(+), 11 deletions(-) diff --git a/polarimetry/figs/corner-nobound.pdf b/polarimetry/figs/corner-nobound.pdf index ad3ac0bcf023e35fbae34fe398eb7228987e7b74..5fbad5c36ef404cca44a65d388c1a157fdbf1715 100644 GIT binary patch delta 33 ocmdlnL3GCi(S{br7N!>F7M3lnY>w;}Mg}H^hDO_Y9a**60k^^k`Tzg` delta 33 ocmdlnL3GCi(S{br7N!>F7M3lnY>w>4hQ_8AhNjzj9a**60k`xC0ssI2 diff --git a/polarimetry/figs/corner.pdf b/polarimetry/figs/corner.pdf index 11307338883d6bd1c554b5fca955b8e94d91815c..499f4106aaf32ee56c7fc25d7ca8295398333487 100644 GIT binary patch delta 31 ncmccqNcj3A;f5B*7N!>FEi9I=*e#3FEi9I=*o_U1P0fr=wmZCH5oZSg%`6J} diff --git a/polarimetry/figs/observation-fit.pdf b/polarimetry/figs/observation-fit.pdf index 287ba2e74260b798d37d25f5d02029e45fb00676..904519e5e7a9da8b43fad77303ceea0b7f70fefb 100644 GIT binary patch delta 22 ecmbPujB(;I#tlDW*e#3=s4_CWa>F+p~L^)Y$-rEC_r6 delta 27 icmbQVlxxybu7(!IElepr?8b)1rWPia+p~L^)Y$-rR|tau diff --git a/polarimetry/figs/observation-mcmc-comb.pdf b/polarimetry/figs/observation-mcmc-comb.pdf index 1957446008dfa0d3925a8530a67a2793e394776f..a99ad01abcd989c58204e2cfb6e727967148530d 100644 GIT binary patch delta 27 jcmdmekZboru7(!IElj<$*e#38C7N!>F7M2#)7Pc1l7LFFq7OocV7M>Q~7QPn#7J(MQ7NHj57LgXw XEn+=e*e#3$3 delta 67 zcmccqKI;1WsD>8C7N!>F7M2#)7Pc1l7LFFq7OocV7M>Q~7QPn#7J(MQ7NHj57LgXw XEn+=e*o_U1P0dX$wol$7=E4jBJ1!Pj diff --git a/polarimetry/figs/trace.pdf b/polarimetry/figs/trace.pdf index 4ad8612308e74cf40953986e3c06de7c18da7db5..b09ff21e36a476f18f6974db42b323374b8d3433 100644 GIT binary patch delta 67 zcmdno6}h=9vY~~sg{g(Pg{6hHg{_6Xg`\n", " \n", - " 100.00% [84000/84000 00:48<00:00 Sampling 4 chains, 0 divergences]\n", + " 100.00% [84000/84000 00:42<00:00 Sampling 4 chains, 0 divergences]\n", " \n", " " ], @@ -670,7 +670,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "Sampling 4 chains for 1_000 tune and 20_000 draw iterations (4_000 + 80_000 draws total) took 59 seconds.\n" + "Sampling 4 chains for 1_000 tune and 20_000 draw iterations (4_000 + 80_000 draws total) took 51 seconds.\n" ] } ], @@ -705,7 +705,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "/var/folders/h6/tz6c2ch9771g23446ncvbczw0000gn/T/ipykernel_18676/2577184737.py:1: DeprecationWarning: The function `traceplot` from PyMC3 is just an alias for `plot_trace` from ArviZ. Please switch to `pymc3.plot_trace` or `arviz.plot_trace`.\n", + "/var/folders/h6/tz6c2ch9771g23446ncvbczw0000gn/T/ipykernel_55894/2577184737.py:1: DeprecationWarning: The function `traceplot` from PyMC3 is just an alias for `plot_trace` from ArviZ. Please switch to `pymc3.plot_trace` or `arviz.plot_trace`.\n", " pm.traceplot(trace_b)\n", "/Users/ysbach/opt/anaconda3/envs/2005ud/lib/python3.8/site-packages/arviz/data/io_pymc3.py:96: FutureWarning: Using `from_pymc3` without the model will be deprecated in a future release. Not using the model will return less accurate and less useful results. Make sure you use the model argument or call from_pymc3 within a model context.\n", " warnings.warn(\n" @@ -1294,7 +1294,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "/var/folders/h6/tz6c2ch9771g23446ncvbczw0000gn/T/ipykernel_18676/4211646313.py:19: FutureWarning: In v4.0, pm.sample will return an `arviz.InferenceData` object instead of a `MultiTrace` by default. You can pass return_inferencedata=True or return_inferencedata=False to be safe and silence this warning.\n", + "/var/folders/h6/tz6c2ch9771g23446ncvbczw0000gn/T/ipykernel_55894/4211646313.py:19: FutureWarning: In v4.0, pm.sample will return an `arviz.InferenceData` object instead of a `MultiTrace` by default. You can pass return_inferencedata=True or return_inferencedata=False to be safe and silence this warning.\n", " trace_f = pm.sample(20000, start=dict(h=0.1, a0=20, c1=0.1, c2=1.e-3))\n", "Auto-assigning NUTS sampler...\n", "INFO:pymc3:Auto-assigning NUTS sampler...\n", @@ -1324,7 +1324,7 @@ " }\n", " \n", " \n", - " 100.00% [84000/84000 00:43<00:00 Sampling 4 chains, 0 divergences]\n", + " 100.00% [84000/84000 00:38<00:00 Sampling 4 chains, 0 divergences]\n", " \n", " " ], @@ -1339,8 +1339,8 @@ "name": "stderr", "output_type": "stream", "text": [ - "Sampling 4 chains for 1_000 tune and 20_000 draw iterations (4_000 + 80_000 draws total) took 52 seconds.\n", - "INFO:pymc3:Sampling 4 chains for 1_000 tune and 20_000 draw iterations (4_000 + 80_000 draws total) took 52 seconds.\n" + "Sampling 4 chains for 1_000 tune and 20_000 draw iterations (4_000 + 80_000 draws total) took 47 seconds.\n", + "INFO:pymc3:Sampling 4 chains for 1_000 tune and 20_000 draw iterations (4_000 + 80_000 draws total) took 47 seconds.\n" ] } ], @@ -1375,7 +1375,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "/var/folders/h6/tz6c2ch9771g23446ncvbczw0000gn/T/ipykernel_18676/2459473891.py:1: DeprecationWarning: The function `traceplot` from PyMC3 is just an alias for `plot_trace` from ArviZ. Please switch to `pymc3.plot_trace` or `arviz.plot_trace`.\n", + "/var/folders/h6/tz6c2ch9771g23446ncvbczw0000gn/T/ipykernel_55894/2459473891.py:1: DeprecationWarning: The function `traceplot` from PyMC3 is just an alias for `plot_trace` from ArviZ. Please switch to `pymc3.plot_trace` or `arviz.plot_trace`.\n", " pm.traceplot(trace_f)\n", "/Users/ysbach/opt/anaconda3/envs/2005ud/lib/python3.8/site-packages/arviz/data/io_pymc3.py:96: FutureWarning: Using `from_pymc3` without the model will be deprecated in a future release. Not using the model will return less accurate and less useful results. Make sure you use the model argument or call from_pymc3 within a model context.\n", " warnings.warn(\n" @@ -1902,7 +1902,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "This notebook was finished at 2021-09-03 13:58:50 (KST = GMT+0900) \n" + "This notebook was finished at 2021-09-08 20:41:48 (KST = GMT+0900) \n" ] } ],